Calcium in PDB 3fyb: Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis

The structure of Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis, PDB code: 3fyb was solved by A.U.Singer, E.Evdokimova, O.Kagan, A.M.Edwards, A.Joachimiak, A.Savchenko, Midwest Center For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	32.19 / 1.80
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	40.501, 69.536, 81.921, 90.00, 90.00, 90.00
R / Rfree (%)	18.7 / 22.1

The structure of Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis also contains other interesting chemical elements:

Chlorine

(Cl)

3 atoms

The binding sites of Calcium atom in the Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis (pdb code 3fyb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis, PDB code: 3fyb:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca106 b:56.4 occ:1.00 O A:VAL70 3.6 12.7 1.0 O A:HOH187 4.0 28.9 1.0 O A:LEU21 4.1 11.5 1.0 O A:TYR69 4.1 11.3 1.0 CB A:ASP25 4.2 16.1 1.0 N A:GLY72 4.2 13.6 1.0 CA A:GLY72 4.2 14.6 1.0 CB A:LEU21 4.2 10.8 1.0 O A:HOH176 4.3 10.9 1.0 C A:LEU21 4.4 10.8 1.0 CG A:ASP25 4.4 17.9 1.0 C A:TYR71 4.5 11.6 1.0 C A:VAL70 4.5 11.8 1.0 OD2 A:ASP25 4.6 19.5 1.0 O A:TYR71 4.7 13.5 1.0 O A:HOH266 4.7 31.4 1.0 N A:ARG22 4.8 11.6 1.0 OD1 A:ASP25 4.9 12.9 1.0 CA A:LEU21 4.9 10.8 1.0 O A:HOH228 5.0 24.1 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca105 b:59.1 occ:1.00 O B:HOH180 3.4 34.6 1.0 O B:HOH149 3.6 22.0 1.0 CA B:GLY72 3.8 15.9 1.0 N B:GLY72 3.9 14.6 1.0 O B:HOH113 3.9 34.8 1.0 O B:VAL70 4.0 13.1 1.0 CG B:ASP25 4.1 14.9 1.0 CB B:ASP25 4.1 13.4 1.0 O B:TYR69 4.3 12.2 1.0 C B:TYR71 4.3 13.3 1.0 OD2 B:ASP25 4.3 15.2 1.0 OD1 B:ASP25 4.4 13.6 1.0 O B:TYR71 4.5 14.0 1.0 O B:LEU21 4.6 8.8 1.0 C B:VAL70 4.8 12.2 1.0 O B:HOH124 4.8 10.4 1.0 O B:HOH111 4.9 37.5 1.0 C B:LEU21 5.0 9.8 1.0

A.U.Singer, E.Evdokimova, O.Kagan, A.M.Edwards, A.Joachimiak, A.Savchenko. Crystal Structure of A Protein of Unknown Function (DUF1244) From Alcanivorax Borkumensis To Be Published.