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Calcium in PDB 3fzx: Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution

Protein crystallography data

The structure of Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution, PDB code: 3fzx was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.07 / 2.22
Space group P 64 2 2
Cell size a, b, c (Å), α, β, γ (°) 143.740, 143.740, 49.460, 90.00, 90.00, 120.00
R / Rfree (%) 20 / 25

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution (pdb code 3fzx). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution, PDB code: 3fzx:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3fzx

Go back to Calcium Binding Sites List in 3fzx
Calcium binding site 1 out of 2 in the Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1

b:49.0
occ:1.00
O A:HOH254 2.2 40.0 1.0
O A:HOH14 2.3 31.7 1.0
OD2 A:ASP139 2.4 35.9 1.0
O A:HOH3 2.4 25.6 1.0
OD1 A:ASP139 2.6 31.7 1.0
O A:HOH285 2.8 39.4 1.0
CG A:ASP139 2.9 26.9 1.0
OD1 A:ASP140 2.9 61.7 1.0
CG A:ASP140 3.7 55.5 1.0
OD2 A:ASP140 3.7 67.6 1.0
CA A:CA2 4.1 53.4 1.0
O A:HOH237 4.2 34.3 1.0
CB A:ASP139 4.4 29.8 1.0
O A:HOH11 4.4 32.2 1.0
N A:ASP140 5.0 35.5 1.0

Calcium binding site 2 out of 2 in 3fzx

Go back to Calcium Binding Sites List in 3fzx
Calcium binding site 2 out of 2 in the Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Exported Protein with Ymcc-Like Fold (BF2203) From Bacteroides Fragilis Nctc 9343 at 2.22 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2

b:53.4
occ:1.00
O A:HOH237 2.2 34.3 1.0
O A:GLY137 2.4 35.9 1.0
O A:HOH286 2.4 50.6 1.0
OD1 A:ASP139 2.4 31.7 1.0
CG A:ASP139 3.4 26.9 1.0
C A:GLY137 3.4 33.7 1.0
OE1 A:GLU167 3.9 59.6 1.0
CB A:ASP139 4.1 29.8 1.0
CA A:CA1 4.1 49.0 1.0
O A:HOH14 4.1 31.7 1.0
CA A:GLY137 4.1 32.8 1.0
OD2 A:ASP139 4.3 35.9 1.0
N A:ASP139 4.3 31.4 1.0
N A:ASP138 4.4 35.2 1.0
CA A:ASP138 4.6 33.2 1.0
C A:ASP138 4.6 33.4 1.0
O A:HOH11 4.7 32.2 1.0
CA A:ASP139 4.9 30.6 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Jul 13 10:27:49 2024

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