Calcium in PDB 3gaz: Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans

The structure of Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans, PDB code: 3gaz was solved by L.Damodharan, S.K.Burley, S.Swaminathan, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.32 / 1.96
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	69.328, 80.694, 110.962, 90.00, 90.00, 90.00
R / Rfree (%)	22.5 / 26.1

The binding sites of Calcium atom in the Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans (pdb code 3gaz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans, PDB code: 3gaz:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:20.5 occ:1.00 O A:HOH830 2.9 22.1 1.0 NZ A:LYS330 3.3 13.9 1.0 NE2 A:GLN327 3.4 20.9 1.0 O A:HOH878 3.5 26.9 1.0 O A:HOH859 3.7 27.5 1.0 CA A:GLY162 3.7 14.8 1.0 CD A:PRO46 3.7 15.8 1.0 CG A:LYS330 3.9 13.1 1.0 N A:GLY162 4.0 14.6 1.0 O A:HOH506 4.0 13.7 1.0 CG A:PRO46 4.0 15.2 1.0 CD A:LYS330 4.2 15.2 1.0 O A:HOH527 4.2 23.0 1.0 CE A:LYS330 4.3 14.6 1.0 CD A:GLN327 4.5 19.4 1.0 ND2 A:ASN45 4.6 11.3 1.0 O A:HOH512 4.7 13.8 1.0 O A:HOH940 4.8 29.0 1.0 CG1 A:VAL134 4.8 11.6 1.0 OE1 A:GLN327 4.8 19.5 1.0 C A:GLY162 5.0 15.2 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of An Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca401 b:21.0 occ:1.00 O B:HOH825 2.9 21.3 1.0 NZ B:LYS330 3.3 11.2 1.0 O B:HOH684 3.3 20.0 1.0 NE2 B:GLN327 3.4 18.7 1.0 CA B:GLY162 3.6 11.7 1.0 CD B:PRO46 3.6 13.8 1.0 O B:HOH752 3.7 35.4 1.0 N B:GLY162 3.9 13.5 1.0 CG B:PRO46 4.0 16.4 1.0 CG B:LYS330 4.0 10.3 1.0 O B:HOH615 4.1 19.0 1.0 CD B:LYS330 4.3 9.4 1.0 CE B:LYS330 4.4 11.2 1.0 O B:HOH586 4.5 24.2 1.0 O B:HOH513 4.5 16.1 1.0 CD B:GLN327 4.5 20.9 1.0 ND2 B:ASN45 4.7 11.7 1.0 OE1 B:GLN327 4.8 19.1 1.0 C B:GLY162 4.9 13.1 1.0 CG1 B:VAL134 4.9 6.7 1.0

L.Damodharan, S.K.Burley, S.Swaminathan. Crystal Structure of Alcohol Dehydrogenase Superfamily Protein From Novosphingobium Aromaticivorans To Be Published.