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Calcium in PDB 3gcj: Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid

Enzymatic activity of Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid

All present enzymatic activity of Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid:
1.11.1.7;

Protein crystallography data

The structure of Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid, PDB code: 3gcj was solved by A.K.Singh, N.Singh, M.Sinha, P.Kaur, A.Srinivasan, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.47 / 2.34
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.618, 80.553, 77.803, 90.00, 102.55, 90.00
R / Rfree (%) 20.4 / 21.2

Other elements in 3gcj:

The structure of Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid also contains other interesting chemical elements:

Iodine (I) 8 atoms
Iron (Fe) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid (pdb code 3gcj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid, PDB code: 3gcj:

Calcium binding site 1 out of 1 in 3gcj

Go back to Calcium Binding Sites List in 3gcj
Calcium binding site 1 out of 1 in the Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca606

b:20.5
occ:1.00
O A:ASP110 2.4 19.6 1.0
O A:PHE186 2.5 19.2 1.0
OD1 A:ASP110 2.5 22.3 1.0
OD1 A:ASP188 2.6 20.5 1.0
OG A:SER190 2.6 19.4 1.0
O A:THR184 2.6 18.8 1.0
OG1 A:THR184 2.6 19.1 1.0
C A:ASP110 3.4 18.9 1.0
C A:THR184 3.5 18.8 1.0
CG A:ASP188 3.5 20.3 1.0
CB A:SER190 3.5 19.7 1.0
CG A:ASP110 3.6 21.9 1.0
C A:PHE186 3.7 18.7 1.0
CB A:THR184 3.8 19.6 1.0
OD2 A:ASP188 3.9 21.3 1.0
N A:ASP188 4.0 20.4 1.0
CA A:THR184 4.0 19.1 1.0
CA A:ASP110 4.2 19.2 1.0
N A:THR184 4.2 19.6 1.0
N A:PHE186 4.2 17.0 1.0
N A:SER190 4.3 19.8 1.0
N A:LEU111 4.4 19.3 1.0
CB A:ASP110 4.4 20.2 1.0
OD2 A:ASP110 4.4 22.9 1.0
CA A:PHE186 4.5 17.8 1.0
N A:SER185 4.5 17.8 1.0
C A:SER185 4.5 16.7 1.0
CA A:LEU111 4.5 18.2 1.0
CA A:SER190 4.6 19.7 1.0
N A:LEU187 4.6 19.6 1.0
O A:HOH639 4.6 10.7 1.0
CA A:LEU187 4.6 20.7 1.0
CB A:ASP188 4.7 20.3 1.0
CA A:ASP188 4.7 19.8 1.0
C A:LEU187 4.8 21.0 1.0
CD2 A:LEU111 4.8 17.5 1.0
CA A:SER185 4.9 16.9 1.0
CG2 A:THR184 4.9 18.9 1.0
N A:ALA189 5.0 19.1 1.0

Reference:

A.K.Singh, N.Singh, M.Sinha, P.Kaur, A.Srinivasan, S.Sharma, T.P.Singh. Mode of Ligand Binding and Assignment of Subsites in Mammalian Peroxidases: Crystal Structure of Lactoperoxidase Complexes with Acetyl Salycylic Acid, Salicylhydroxamic Acid and Benzylhydroxamic Acid To Be Published.
Page generated: Sat Dec 12 04:12:44 2020

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