Calcium in PDB 3gcw: PCSK9:Egfa(H306Y)

The structure of PCSK9:Egfa(H306Y), PDB code: 3gcw was solved by H.J.Kwon, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	39.10 / 2.70
Space group	P 41 21 2
Cell size a, b, c (Å), α, β, γ (°)	115.661, 115.661, 133.401, 90.00, 90.00, 90.00
R / Rfree (%)	23.4 / 27.8

The binding sites of Calcium atom in the PCSK9:Egfa(H306Y) (pdb code 3gcw). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the PCSK9:Egfa(H306Y), PDB code: 3gcw:

Calcium binding site 1 out of 1 in the PCSK9:Egfa(H306Y)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of PCSK9:Egfa(H306Y) within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca1 b:48.2 occ:1.00 OD1 E:ASP310 2.4 52.1 1.0 O E:LEU311 2.4 51.8 1.0 O E:GLY314 2.6 52.4 1.0 O E:THR294 2.6 60.8 1.0 OE1 E:GLU296 2.7 58.2 1.0 OE2 E:GLU296 3.1 58.3 1.0 CD E:GLU296 3.3 58.3 1.0 O E:MET292 3.6 64.6 1.0 CG E:ASP310 3.6 52.0 1.0 C E:GLY314 3.6 52.4 1.0 C E:LEU311 3.7 51.9 1.0 C E:THR294 3.8 60.8 1.0 N E:GLY314 3.9 51.8 1.0 O E:LYS312 4.0 51.6 1.0 CA E:GLY314 4.1 52.1 1.0 N E:LEU311 4.2 52.0 1.0 N E:THR294 4.2 62.1 1.0 OD2 E:ASP310 4.3 51.7 1.0 C E:LYS312 4.3 51.6 1.0 C E:ASP310 4.4 52.1 1.0 CA E:LEU311 4.6 52.0 1.0 CA E:ASP310 4.6 52.1 1.0 N E:LYS312 4.6 51.7 1.0 CA E:LYS312 4.6 51.6 1.0 CA E:THR294 4.7 61.5 1.0 C E:ILE313 4.7 51.6 1.0 C E:MET292 4.7 64.5 1.0 CB E:ASP310 4.7 52.0 1.0 N E:ASN295 4.7 60.1 1.0 N E:GLU296 4.7 58.3 1.0 CG E:GLU296 4.7 57.7 1.0 CA E:ASN295 4.8 59.3 1.0 N E:TYR315 4.8 52.6 1.0 N E:ILE313 4.8 51.6 1.0 O E:ASP310 4.9 52.1 1.0

M.C.Mcnutt, H.J.Kwon, C.Chen, J.R.Chen, J.D.Horton, T.A.Lagace. Antagonism of Secreted PCSK9 Increases Low Density Lipoprotein Receptor Expression in HEPG2 Cells. J.Biol.Chem. V. 284 10561 2009.
ISSN: ISSN 0021-9258
PubMed: 19224862
DOI: 10.1074/JBC.M808802200