Calcium in PDB 3ge4: Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Protein crystallography data
The structure of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis, PDB code: 3ge4
was solved by
Seattle Structural Genomics Center For Infectious Disease(Ssgcid),
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
19.86 /
1.70
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
95.240,
98.330,
105.450,
90.00,
89.98,
90.00
|
R / Rfree (%)
|
14.3 /
17.9
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
(pdb code 3ge4). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis, PDB code: 3ge4:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 1 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca167
b:25.7
occ:1.00
|
OE2
|
A:GLU75
|
2.1
|
24.5
|
1.0
|
OD2
|
A:ASP71
|
2.3
|
15.3
|
0.5
|
O
|
B:HOH1925
|
2.3
|
27.3
|
1.0
|
NE2
|
B:HIS44
|
2.4
|
20.8
|
1.0
|
OD1
|
A:ASP71
|
2.4
|
19.4
|
0.5
|
CG
|
A:ASP71
|
2.6
|
15.2
|
0.5
|
CD
|
A:GLU75
|
3.0
|
22.8
|
1.0
|
O
|
B:HOH1742
|
3.2
|
31.9
|
1.0
|
CE1
|
B:HIS44
|
3.3
|
18.4
|
1.0
|
CD2
|
B:HIS44
|
3.4
|
20.3
|
1.0
|
OE1
|
A:GLU75
|
3.6
|
23.6
|
1.0
|
CG
|
A:ASP71
|
3.7
|
15.6
|
0.5
|
NZ
|
B:LYS41
|
3.8
|
16.1
|
1.0
|
OD1
|
A:ASP71
|
3.8
|
17.8
|
0.5
|
OD2
|
B:ASP60
|
4.0
|
22.6
|
1.0
|
OD2
|
A:ASP71
|
4.0
|
19.7
|
0.5
|
CB
|
A:ASP71
|
4.1
|
14.3
|
0.5
|
CG
|
A:GLU75
|
4.1
|
17.3
|
1.0
|
CB
|
A:ASP71
|
4.1
|
14.0
|
0.5
|
NE2
|
B:HIS56
|
4.2
|
17.5
|
1.0
|
CE1
|
B:HIS56
|
4.2
|
17.1
|
1.0
|
NE1
|
B:TRP45
|
4.3
|
15.1
|
1.0
|
OD1
|
B:ASP60
|
4.4
|
18.1
|
1.0
|
CD1
|
B:TRP45
|
4.4
|
16.6
|
1.0
|
ND1
|
B:HIS44
|
4.5
|
18.8
|
1.0
|
CG
|
B:HIS44
|
4.5
|
17.7
|
1.0
|
CG
|
B:ASP60
|
4.6
|
19.1
|
1.0
|
O
|
A:HOH2013
|
4.8
|
39.8
|
1.0
|
CA
|
A:ASP71
|
5.0
|
14.2
|
0.5
|
CA
|
A:ASP71
|
5.0
|
14.1
|
0.5
|
|
Calcium binding site 2 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 2 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca167
b:24.9
occ:1.00
|
OE2
|
B:GLU75
|
2.2
|
21.6
|
1.0
|
O
|
A:HOH2031
|
2.2
|
26.1
|
1.0
|
NE2
|
A:HIS44
|
2.3
|
14.0
|
1.0
|
OD2
|
B:ASP71
|
2.3
|
26.4
|
1.0
|
OD1
|
B:ASP71
|
2.5
|
27.1
|
1.0
|
CG
|
B:ASP71
|
2.7
|
22.7
|
1.0
|
O
|
A:HOH576
|
2.8
|
24.0
|
1.0
|
CD
|
B:GLU75
|
3.0
|
20.7
|
1.0
|
CE1
|
A:HIS44
|
3.2
|
15.6
|
1.0
|
CD2
|
A:HIS44
|
3.4
|
16.7
|
1.0
|
OE1
|
B:GLU75
|
3.5
|
20.3
|
1.0
|
NZ
|
A:LYS41
|
3.9
|
17.6
|
1.0
|
OD2
|
A:ASP60
|
4.0
|
18.6
|
1.0
|
NE2
|
A:HIS56
|
4.1
|
16.7
|
1.0
|
CG
|
B:GLU75
|
4.2
|
15.9
|
1.0
|
CE1
|
A:HIS56
|
4.2
|
14.8
|
1.0
|
CB
|
B:ASP71
|
4.2
|
15.7
|
1.0
|
NE1
|
A:TRP45
|
4.3
|
14.2
|
1.0
|
OD1
|
A:ASP60
|
4.4
|
19.0
|
1.0
|
ND1
|
A:HIS44
|
4.4
|
14.4
|
1.0
|
O
|
D:HOH1814
|
4.5
|
38.4
|
1.0
|
CG
|
A:HIS44
|
4.5
|
14.7
|
1.0
|
CD1
|
A:TRP45
|
4.5
|
15.0
|
1.0
|
CG
|
A:ASP60
|
4.6
|
15.3
|
1.0
|
O
|
B:HOH1233
|
5.0
|
38.4
|
1.0
|
|
Calcium binding site 3 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 3 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca167
b:23.4
occ:1.00
|
OE2
|
C:GLU75
|
2.1
|
20.6
|
1.0
|
O
|
I:HOH2051
|
2.1
|
21.6
|
1.0
|
OD2
|
C:ASP71
|
2.2
|
9.9
|
0.5
|
NE2
|
I:HIS44
|
2.4
|
10.9
|
1.0
|
OD1
|
C:ASP71
|
2.5
|
14.2
|
0.5
|
CG
|
C:ASP71
|
2.7
|
11.9
|
0.5
|
O
|
I:HOH1235
|
2.8
|
28.9
|
1.0
|
CD
|
C:GLU75
|
3.1
|
17.0
|
1.0
|
CE1
|
I:HIS44
|
3.4
|
11.0
|
1.0
|
CD2
|
I:HIS44
|
3.4
|
10.9
|
1.0
|
OE1
|
C:GLU75
|
3.5
|
20.4
|
1.0
|
CG
|
C:ASP71
|
3.8
|
12.9
|
0.5
|
OD2
|
C:ASP71
|
3.8
|
16.8
|
0.5
|
NZ
|
I:LYS41
|
3.9
|
15.4
|
1.0
|
OD2
|
I:ASP60
|
3.9
|
19.4
|
1.0
|
OD1
|
C:ASP71
|
4.1
|
17.2
|
0.5
|
NE2
|
I:HIS56
|
4.2
|
10.7
|
1.0
|
CB
|
C:ASP71
|
4.2
|
11.1
|
0.5
|
CB
|
C:ASP71
|
4.2
|
11.6
|
0.5
|
CG
|
C:GLU75
|
4.2
|
13.4
|
1.0
|
NE1
|
I:TRP45
|
4.3
|
11.9
|
1.0
|
CE1
|
I:HIS56
|
4.3
|
11.1
|
1.0
|
O
|
E:HOH1825
|
4.4
|
43.2
|
1.0
|
OD1
|
I:ASP60
|
4.4
|
18.6
|
1.0
|
CD1
|
I:TRP45
|
4.4
|
11.9
|
1.0
|
ND1
|
I:HIS44
|
4.5
|
11.6
|
1.0
|
CG
|
I:HIS44
|
4.5
|
9.4
|
1.0
|
CG
|
I:ASP60
|
4.6
|
14.3
|
1.0
|
|
Calcium binding site 4 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 4 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca167
b:25.2
occ:1.00
|
OE2
|
D:GLU75
|
2.1
|
23.3
|
1.0
|
O
|
J:HOH2073
|
2.2
|
22.4
|
1.0
|
OD2
|
D:ASP71
|
2.4
|
18.2
|
0.5
|
OD1
|
D:ASP71
|
2.4
|
13.8
|
0.5
|
NE2
|
J:HIS44
|
2.4
|
12.3
|
1.0
|
CG
|
D:ASP71
|
2.7
|
14.4
|
0.5
|
O
|
D:HOH1096
|
3.0
|
29.4
|
1.0
|
CD
|
D:GLU75
|
3.0
|
18.4
|
1.0
|
CE1
|
J:HIS44
|
3.4
|
12.7
|
1.0
|
CD2
|
J:HIS44
|
3.4
|
12.2
|
1.0
|
OE1
|
D:GLU75
|
3.4
|
18.6
|
1.0
|
NZ
|
J:LYS41
|
3.9
|
14.4
|
1.0
|
CG
|
D:ASP71
|
4.0
|
14.6
|
0.5
|
OD2
|
J:ASP60
|
4.0
|
18.1
|
1.0
|
OD1
|
D:ASP71
|
4.0
|
18.0
|
0.5
|
CG
|
D:GLU75
|
4.1
|
14.6
|
1.0
|
NE2
|
J:HIS56
|
4.1
|
12.2
|
1.0
|
CB
|
D:ASP71
|
4.2
|
11.8
|
0.5
|
CB
|
D:ASP71
|
4.2
|
12.1
|
0.5
|
CE1
|
J:HIS56
|
4.3
|
11.3
|
1.0
|
NE1
|
J:TRP45
|
4.3
|
10.9
|
1.0
|
OD2
|
D:ASP71
|
4.3
|
19.2
|
0.5
|
O
|
L:HOH1859
|
4.4
|
36.7
|
1.0
|
O
|
D:HOH1346
|
4.4
|
44.0
|
1.0
|
OD1
|
J:ASP60
|
4.4
|
18.2
|
1.0
|
CD1
|
J:TRP45
|
4.5
|
9.5
|
1.0
|
ND1
|
J:HIS44
|
4.5
|
10.6
|
1.0
|
CG
|
J:HIS44
|
4.5
|
11.5
|
1.0
|
CG
|
J:ASP60
|
4.7
|
14.2
|
1.0
|
|
Calcium binding site 5 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 5 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca167
b:23.1
occ:1.00
|
OE2
|
E:GLU75
|
2.2
|
20.6
|
1.0
|
OD2
|
E:ASP71
|
2.3
|
14.8
|
0.5
|
O
|
F:HOH2089
|
2.3
|
26.7
|
1.0
|
NE2
|
F:HIS44
|
2.4
|
12.2
|
1.0
|
OD1
|
E:ASP71
|
2.4
|
11.3
|
0.5
|
CG
|
E:ASP71
|
2.6
|
12.5
|
0.5
|
O
|
E:HOH1017
|
2.9
|
27.2
|
1.0
|
CD
|
E:GLU75
|
3.0
|
16.4
|
1.0
|
O
|
E:HOH1869
|
3.0
|
35.2
|
1.0
|
CE1
|
F:HIS44
|
3.3
|
12.3
|
1.0
|
CD2
|
F:HIS44
|
3.3
|
11.9
|
1.0
|
OE1
|
E:GLU75
|
3.4
|
17.7
|
1.0
|
CG
|
E:ASP71
|
3.9
|
12.6
|
0.5
|
NZ
|
F:LYS41
|
3.9
|
14.6
|
1.0
|
OD2
|
E:ASP71
|
4.0
|
17.9
|
0.5
|
OD2
|
F:ASP60
|
4.0
|
15.2
|
1.0
|
OD1
|
E:ASP71
|
4.0
|
14.3
|
0.5
|
NE2
|
F:HIS56
|
4.1
|
13.0
|
1.0
|
CB
|
E:ASP71
|
4.2
|
10.4
|
0.5
|
CG
|
E:GLU75
|
4.2
|
12.1
|
1.0
|
CE1
|
F:HIS56
|
4.2
|
10.4
|
1.0
|
NE1
|
F:TRP45
|
4.2
|
12.9
|
1.0
|
CB
|
E:ASP71
|
4.2
|
11.2
|
0.5
|
OD1
|
F:ASP60
|
4.4
|
15.7
|
1.0
|
CD1
|
F:TRP45
|
4.4
|
12.4
|
1.0
|
ND1
|
F:HIS44
|
4.5
|
12.0
|
1.0
|
CG
|
F:HIS44
|
4.5
|
11.5
|
1.0
|
CG
|
F:ASP60
|
4.6
|
14.6
|
1.0
|
O
|
F:HOH1413
|
4.9
|
39.2
|
1.0
|
O
|
E:HOH2090
|
4.9
|
41.2
|
1.0
|
|
Calcium binding site 6 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 6 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
F:Ca167
b:20.9
occ:1.00
|
O
|
E:HOH2082
|
2.1
|
22.6
|
1.0
|
OE2
|
F:GLU75
|
2.1
|
17.9
|
1.0
|
OD1
|
F:ASP71
|
2.2
|
3.1
|
0.3
|
OD2
|
F:ASP71
|
2.3
|
2.5
|
0.3
|
NE2
|
E:HIS44
|
2.3
|
10.4
|
1.0
|
CG
|
F:ASP71
|
2.6
|
5.3
|
0.3
|
O
|
E:HOH1747
|
2.9
|
28.5
|
1.0
|
CD
|
F:GLU75
|
3.0
|
14.6
|
1.0
|
O
|
F:HOH1448
|
3.1
|
35.4
|
1.0
|
OD1
|
F:ASP71
|
3.2
|
22.7
|
0.7
|
CD2
|
E:HIS44
|
3.3
|
10.3
|
1.0
|
CE1
|
E:HIS44
|
3.3
|
12.8
|
1.0
|
OE1
|
F:GLU75
|
3.4
|
15.3
|
1.0
|
CG
|
F:ASP71
|
3.7
|
17.0
|
0.7
|
NZ
|
E:LYS41
|
3.9
|
16.1
|
1.0
|
OD2
|
E:ASP60
|
4.0
|
14.0
|
1.0
|
NE2
|
E:HIS56
|
4.1
|
11.1
|
1.0
|
CG
|
F:GLU75
|
4.1
|
11.8
|
1.0
|
CB
|
F:ASP71
|
4.2
|
7.6
|
0.3
|
OD2
|
F:ASP71
|
4.2
|
25.7
|
0.7
|
CB
|
F:ASP71
|
4.2
|
10.9
|
0.7
|
CE1
|
E:HIS56
|
4.2
|
10.2
|
1.0
|
NE1
|
E:TRP45
|
4.3
|
9.7
|
1.0
|
ND1
|
E:HIS44
|
4.4
|
9.9
|
1.0
|
CG
|
E:HIS44
|
4.5
|
8.2
|
1.0
|
OD1
|
E:ASP60
|
4.5
|
15.1
|
1.0
|
CD1
|
E:TRP45
|
4.5
|
10.2
|
1.0
|
O
|
F:HOH825
|
4.6
|
29.0
|
1.0
|
CG
|
E:ASP60
|
4.6
|
13.3
|
1.0
|
O
|
E:HOH1260
|
4.8
|
36.0
|
1.0
|
|
Calcium binding site 7 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 7 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
G:Ca167
b:22.9
occ:1.00
|
O
|
H:HOH1976
|
2.2
|
20.2
|
1.0
|
OE2
|
G:GLU75
|
2.3
|
19.6
|
1.0
|
OD1
|
G:ASP71
|
2.3
|
12.8
|
0.5
|
OD2
|
G:ASP71
|
2.3
|
11.1
|
0.5
|
NE2
|
H:HIS44
|
2.4
|
12.5
|
1.0
|
CG
|
G:ASP71
|
2.7
|
11.6
|
0.5
|
O
|
H:HOH219
|
2.9
|
26.7
|
1.0
|
CD
|
G:GLU75
|
3.1
|
19.4
|
1.0
|
CE1
|
H:HIS44
|
3.3
|
11.4
|
1.0
|
CD2
|
H:HIS44
|
3.4
|
9.9
|
1.0
|
OE1
|
G:GLU75
|
3.5
|
20.4
|
1.0
|
NZ
|
H:LYS41
|
3.8
|
15.2
|
1.0
|
CG
|
G:ASP71
|
3.9
|
11.6
|
0.5
|
OD2
|
H:ASP60
|
3.9
|
15.3
|
1.0
|
OD1
|
G:ASP71
|
3.9
|
15.2
|
0.5
|
CB
|
G:ASP71
|
4.2
|
9.7
|
0.5
|
CG
|
G:GLU75
|
4.2
|
14.7
|
1.0
|
CB
|
G:ASP71
|
4.2
|
9.6
|
0.5
|
NE2
|
H:HIS56
|
4.2
|
11.7
|
1.0
|
OD2
|
G:ASP71
|
4.2
|
15.6
|
0.5
|
CE1
|
H:HIS56
|
4.3
|
12.5
|
1.0
|
NE1
|
H:TRP45
|
4.3
|
9.4
|
1.0
|
OD1
|
H:ASP60
|
4.4
|
14.1
|
1.0
|
ND1
|
H:HIS44
|
4.4
|
9.3
|
1.0
|
CD1
|
H:TRP45
|
4.4
|
10.9
|
1.0
|
CG
|
H:HIS44
|
4.5
|
8.7
|
1.0
|
CG
|
H:ASP60
|
4.5
|
14.2
|
1.0
|
O
|
H:HOH1756
|
4.7
|
34.3
|
1.0
|
O
|
G:HOH1308
|
5.0
|
39.6
|
1.0
|
|
Calcium binding site 8 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 8 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
H:Ca167
b:18.2
occ:1.00
|
OE2
|
H:GLU75
|
2.1
|
15.1
|
1.0
|
O
|
G:HOH2134
|
2.2
|
25.4
|
1.0
|
OD2
|
H:ASP71
|
2.2
|
12.8
|
0.5
|
OD1
|
H:ASP71
|
2.4
|
11.4
|
0.5
|
NE2
|
G:HIS44
|
2.4
|
12.1
|
1.0
|
CG
|
H:ASP71
|
2.6
|
10.3
|
0.5
|
O
|
G:HOH178
|
2.7
|
23.9
|
1.0
|
CD
|
H:GLU75
|
3.0
|
15.2
|
1.0
|
O
|
H:HOH2135
|
3.2
|
40.6
|
1.0
|
CD2
|
G:HIS44
|
3.3
|
11.9
|
1.0
|
OE1
|
H:GLU75
|
3.4
|
15.6
|
1.0
|
CE1
|
G:HIS44
|
3.4
|
11.5
|
1.0
|
NZ
|
G:LYS41
|
3.9
|
14.1
|
1.0
|
CG
|
H:ASP71
|
3.9
|
10.7
|
0.5
|
OD1
|
H:ASP71
|
4.0
|
12.6
|
0.5
|
OD2
|
G:ASP60
|
4.0
|
14.4
|
1.0
|
CB
|
H:ASP71
|
4.1
|
9.2
|
0.5
|
OD2
|
H:ASP71
|
4.1
|
15.5
|
0.5
|
CB
|
H:ASP71
|
4.2
|
9.5
|
0.5
|
CG
|
H:GLU75
|
4.2
|
11.9
|
1.0
|
NE2
|
G:HIS56
|
4.2
|
8.4
|
1.0
|
NE1
|
G:TRP45
|
4.3
|
8.5
|
1.0
|
CE1
|
G:HIS56
|
4.3
|
10.5
|
1.0
|
CD1
|
G:TRP45
|
4.4
|
8.8
|
1.0
|
OD1
|
G:ASP60
|
4.4
|
15.9
|
1.0
|
CG
|
G:HIS44
|
4.5
|
9.4
|
1.0
|
ND1
|
G:HIS44
|
4.5
|
8.6
|
1.0
|
CG
|
G:ASP60
|
4.6
|
12.6
|
1.0
|
O
|
H:HOH1095
|
4.7
|
29.9
|
1.0
|
|
Calcium binding site 9 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 9 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
I:Ca167
b:26.6
occ:1.00
|
OE2
|
I:GLU75
|
2.2
|
23.2
|
1.0
|
O
|
C:HOH2047
|
2.2
|
26.4
|
1.0
|
OD1
|
I:ASP71
|
2.3
|
13.7
|
0.5
|
OD2
|
I:ASP71
|
2.4
|
14.7
|
0.5
|
NE2
|
C:HIS44
|
2.4
|
13.0
|
1.0
|
CG
|
I:ASP71
|
2.7
|
14.3
|
0.5
|
O
|
C:HOH1137
|
3.0
|
24.2
|
1.0
|
CD
|
I:GLU75
|
3.1
|
18.8
|
1.0
|
CD2
|
C:HIS44
|
3.3
|
12.2
|
1.0
|
CE1
|
C:HIS44
|
3.4
|
15.2
|
1.0
|
OE1
|
I:GLU75
|
3.6
|
20.7
|
1.0
|
NZ
|
C:LYS41
|
3.8
|
13.1
|
1.0
|
OD1
|
I:ASP71
|
3.9
|
18.3
|
0.5
|
CG
|
I:ASP71
|
3.9
|
13.6
|
0.5
|
OD2
|
C:ASP60
|
4.0
|
15.7
|
1.0
|
CG
|
I:GLU75
|
4.2
|
14.4
|
1.0
|
CB
|
I:ASP71
|
4.2
|
11.2
|
0.5
|
CB
|
I:ASP71
|
4.2
|
11.4
|
0.5
|
NE2
|
C:HIS56
|
4.2
|
13.2
|
1.0
|
OD2
|
I:ASP71
|
4.2
|
18.5
|
0.5
|
NE1
|
C:TRP45
|
4.3
|
13.7
|
1.0
|
CE1
|
C:HIS56
|
4.4
|
14.7
|
1.0
|
CD1
|
C:TRP45
|
4.4
|
13.7
|
1.0
|
OD1
|
C:ASP60
|
4.5
|
14.2
|
1.0
|
ND1
|
C:HIS44
|
4.5
|
11.5
|
1.0
|
CG
|
C:HIS44
|
4.5
|
13.2
|
1.0
|
O
|
I:HOH1249
|
4.6
|
41.7
|
1.0
|
O
|
K:HOH2046
|
4.6
|
38.3
|
1.0
|
CG
|
C:ASP60
|
4.6
|
16.0
|
1.0
|
O
|
C:HOH959
|
5.0
|
35.7
|
1.0
|
|
Calcium binding site 10 out
of 12 in 3ge4
Go back to
Calcium Binding Sites List in 3ge4
Calcium binding site 10 out
of 12 in the Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of Ferritin:Dna-Binding Protein Dps From Brucella Melitensis within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
J:Ca167
b:22.7
occ:1.00
|
O
|
D:HOH2071
|
2.1
|
25.2
|
1.0
|
OE2
|
J:GLU75
|
2.2
|
19.6
|
1.0
|
OD1
|
J:ASP71
|
2.3
|
13.6
|
0.5
|
OD2
|
J:ASP71
|
2.3
|
13.6
|
0.5
|
NE2
|
D:HIS44
|
2.3
|
11.9
|
1.0
|
CG
|
J:ASP71
|
2.6
|
13.4
|
0.5
|
O
|
D:HOH924
|
3.1
|
31.0
|
1.0
|
CD
|
J:GLU75
|
3.1
|
17.0
|
1.0
|
CD2
|
D:HIS44
|
3.3
|
10.6
|
1.0
|
CE1
|
D:HIS44
|
3.3
|
13.8
|
1.0
|
OE1
|
J:GLU75
|
3.5
|
17.2
|
1.0
|
CG
|
J:ASP71
|
3.9
|
14.6
|
0.5
|
OD2
|
D:ASP60
|
3.9
|
16.7
|
1.0
|
NZ
|
D:LYS41
|
3.9
|
15.3
|
1.0
|
OD1
|
J:ASP71
|
4.0
|
18.1
|
0.5
|
OD2
|
J:ASP71
|
4.1
|
18.8
|
0.5
|
NE2
|
D:HIS56
|
4.1
|
12.4
|
1.0
|
CB
|
J:ASP71
|
4.2
|
10.9
|
0.5
|
CG
|
J:GLU75
|
4.2
|
13.1
|
1.0
|
CB
|
J:ASP71
|
4.3
|
11.7
|
0.5
|
CE1
|
D:HIS56
|
4.3
|
13.0
|
1.0
|
NE1
|
D:TRP45
|
4.3
|
11.8
|
1.0
|
OD1
|
D:ASP60
|
4.4
|
16.4
|
1.0
|
ND1
|
D:HIS44
|
4.4
|
13.2
|
1.0
|
CD1
|
D:TRP45
|
4.5
|
11.5
|
1.0
|
CG
|
D:HIS44
|
4.5
|
12.0
|
1.0
|
CG
|
D:ASP60
|
4.6
|
14.7
|
1.0
|
O
|
J:HOH1357
|
4.8
|
30.2
|
1.0
|
|
Reference:
Seattle Structural Genomics Center For Infectiousdisease (Ssgcid),
Seattle Structural Genomics Center For Infectious Disease(Ssgcid).
N/A N/A.
Page generated: Sat Jul 13 10:36:14 2024
|