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Calcium in PDB 3goa: Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase

Enzymatic activity of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase

All present enzymatic activity of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase:
2.3.1.16;

Protein crystallography data

The structure of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase, PDB code: 3goa was solved by S.M.Anderson, T.Skarina, O.Onopriyenko, Z.Wawrzak, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 30.00 / 1.70
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 73.000, 64.500, 74.400, 90.00, 104.50, 90.00
R / Rfree (%) 14.2 / 19.2

Other elements in 3goa:

The structure of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase also contains other interesting chemical elements:

Chlorine (Cl) 2 atoms
Sodium (Na) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase (pdb code 3goa). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase, PDB code: 3goa:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3goa

Go back to Calcium Binding Sites List in 3goa
Calcium binding site 1 out of 2 in the Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca388

b:29.4
occ:1.00
O B:HOH694 2.2 19.1 1.0
O B:HOH756 2.3 31.9 1.0
O B:HOH419 2.4 27.5 1.0
O B:HOH773 2.5 26.4 1.0
O B:HOH857 3.8 33.1 1.0
O B:HOH728 4.2 20.2 1.0
O B:HOH494 4.4 16.6 1.0
O B:HOH961 4.4 17.8 0.5
O B:HOH623 4.5 22.9 1.0
OD1 B:ASN42 4.6 15.3 1.0
OD2 B:ASP8 4.8 11.7 1.0
CG B:ASP8 4.8 14.1 1.0
OD1 B:ASP8 4.8 12.4 1.0
O B:VAL7 4.8 11.8 1.0
NH2 B:ARG41 5.0 16.0 1.0
O B:ARG41 5.0 14.2 1.0

Calcium binding site 2 out of 2 in 3goa

Go back to Calcium Binding Sites List in 3goa
Calcium binding site 2 out of 2 in the Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Salmonella Typhimurium Fada 3-Ketoacyl-Coa Thiolase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca389

b:54.6
occ:1.00
O B:HOH935 2.3 27.6 1.0
O B:HOH936 2.3 41.6 1.0
O B:HOH601 2.4 31.5 1.0
O B:HOH512 2.6 27.7 1.0
O B:HOH835 2.7 40.3 1.0
OE1 B:GLN366 4.1 22.9 1.0
O B:HOH572 4.4 30.4 1.0
OD1 B:ASP303 4.4 20.3 1.0
O B:ASP301 4.4 15.6 1.0
O B:HOH788 4.5 43.0 1.0
OD2 B:ASP303 4.7 18.2 1.0

Reference:

S.M.Anderson, T.Skarina, O.Onopriyenko, Z.Wawrzak, L.Papazisi, A.Savchenko, W.F.Anderson, Center For Structural Genomics Ofinfectious Diseases (Csgid). N/A N/A.
Page generated: Sat Jul 13 10:44:26 2024

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