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Calcium in PDB 3goe: Molecular Mimicry of Sumo Promotes Dna Repair

Protein crystallography data

The structure of Molecular Mimicry of Sumo Promotes Dna Repair, PDB code: 3goe was solved by J.J.P.Perry, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 50.00 / 0.97
Space group I 21 3
Cell size a, b, c (Å), α, β, γ (°) 81.519, 81.519, 81.519, 90.00, 90.00, 90.00
R / Rfree (%) 14.5 / 16.9

Calcium Binding Sites:

The binding sites of Calcium atom in the Molecular Mimicry of Sumo Promotes Dna Repair (pdb code 3goe). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Molecular Mimicry of Sumo Promotes Dna Repair, PDB code: 3goe:

Calcium binding site 1 out of 1 in 3goe

Go back to Calcium Binding Sites List in 3goe
Calcium binding site 1 out of 1 in the Molecular Mimicry of Sumo Promotes Dna Repair


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Molecular Mimicry of Sumo Promotes Dna Repair within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca82

b:18.6
occ:1.00
O A:HOH141 1.8 19.3 1.0
O A:HOH142 2.2 31.3 1.0
O A:SER15 2.3 13.8 1.0
OD1 A:ASP20 2.3 12.5 1.0
O A:SER18 2.7 23.2 1.0
CG A:ASP20 3.2 11.9 1.0
H A:SER15 3.4 13.6 1.0
H A:ASP20 3.4 16.7 1.0
C A:SER15 3.5 13.0 1.0
OD2 A:ASP20 3.7 16.9 1.0
N A:ASP20 3.8 13.9 1.0
C A:SER18 3.8 21.2 1.0
HB3 A:SER15 3.9 16.5 1.0
HA A:GLU19 3.9 22.6 1.0
H A:SER18 4.0 30.9 1.0
HA A:SER16 4.1 26.0 1.0
N A:SER15 4.1 11.3 1.0
CA A:SER15 4.2 12.1 1.0
CB A:ASP20 4.3 12.4 1.0
C A:GLU19 4.4 16.6 1.0
O A:HOH174 4.4 39.7 1.0
CA A:ASP20 4.5 13.0 1.0
CA A:GLU19 4.5 18.9 1.0
N A:SER16 4.5 18.8 1.0
HA A:ASP20 4.5 15.6 1.0
CB A:SER15 4.5 13.7 1.0
HB2 A:ASP20 4.5 14.9 1.0
N A:SER18 4.6 25.7 1.0
N A:GLU19 4.6 18.7 1.0
CA A:SER16 4.6 21.7 1.0
C A:SER16 4.7 24.0 1.0
CA A:SER18 4.9 22.7 1.0
O A:SER16 5.0 36.1 1.0

Reference:

J.Prudden, J.J.Perry, A.S.Arvai, J.A.Tainer, M.N.Boddy. Molecular Mimicry of Sumo Promotes Dna Repair. Nat.Struct.Mol.Biol. V. 16 509 2009.
ISSN: ISSN 1545-9993
PubMed: 19363481
DOI: 10.1038/NSMB.1582
Page generated: Sat Jul 13 10:45:04 2024

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