Atomistry » Calcium » PDB 3gy6-3hii » 3h0o
Atomistry »
  Calcium »
    PDB 3gy6-3hii »
      3h0o »

Calcium in PDB 3h0o: The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase

Enzymatic activity of The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase

All present enzymatic activity of The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase:
3.2.1.73;

Protein crystallography data

The structure of The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase, PDB code: 3h0o was solved by L.C.Tsai, C.H.Hsiao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 27.87 / 1.40
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 60.400, 68.600, 70.700, 90.00, 90.00, 90.00
R / Rfree (%) 17.9 / 19.9

Calcium Binding Sites:

The binding sites of Calcium atom in the The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase (pdb code 3h0o). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase, PDB code: 3h0o:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3h0o

Go back to Calcium Binding Sites List in 3h0o
Calcium binding site 1 out of 3 in the The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:12.1
occ:1.00
 O A:GLY222 2.3 14.6 1.0
O A:HOH467 2.4 19.1 1.0
O A:ASN164 2.4 11.4 1.0
O A:ASN189 2.4 11.7 1.0
OD1 A:ASN164 2.4 14.2 1.0
O A:HOH479 2.4 17.7 1.0
O A:HOH466 2.4 16.0 1.0
C A:GLY222 3.4 15.4 1.0
C A:ASN164 3.4 10.3 1.0
C A:ASN189 3.5 10.3 1.0
CG A:ASN164 3.5 14.9 1.0
CA A:ASN164 3.9 10.3 1.0
CA A:GLY222 4.0 15.3 1.0
CA A:ASN189 4.2 10.4 1.0
CB A:ASN189 4.3 13.4 1.0
CB A:ASN164 4.4 12.2 1.0
O A:HOH674 4.4 29.3 1.0
O A:HOH570 4.5 28.4 1.0
ND2 A:ASN164 4.5 17.4 1.0
N A:MET223 4.5 13.7 1.0
N A:TRP165 4.6 9.4 1.0
N A:PHE190 4.6 10.5 1.0
O A:HOH423 4.7 29.6 1.0
CB A:PHE190 4.7 12.0 1.0
O A:HOH422 4.7 29.4 1.0
OD1 A:ASN189 4.8 18.0 1.0
CB A:TRP165 4.8 11.2 1.0
CG A:MET223 4.8 18.1 1.0
CA A:MET223 4.8 14.7 1.0
C A:PHE190 4.9 12.3 1.0
OD2 A:ASP191 4.9 16.2 1.0
CA A:PHE190 4.9 11.0 1.0
CA A:TRP165 5.0 9.4 1.0

Calcium binding site 2 out of 3 in 3h0o

Go back to Calcium Binding Sites List in 3h0o
Calcium binding site 2 out of 3 in the The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:12.8
occ:1.00
 O A:PHE152 2.3 13.9 1.0
O A:HOH482 2.4 17.4 1.0
OE1 A:GLU154 2.4 13.8 1.0
O A:HOH612 2.5 16.7 1.0
OE2 A:GLU154 2.5 13.2 1.0
CD A:GLU154 2.8 13.6 1.0
C A:PHE152 3.5 13.4 1.0
CA A:PHE152 4.3 13.3 1.0
CB A:PHE152 4.3 12.7 1.0
O A:HOH481 4.3 16.1 1.0
CG A:GLU154 4.4 12.0 1.0
O A:HOH585 4.4 26.2 1.0
N A:PHE152 4.4 12.8 1.0
N A:ASP153 4.5 12.7 1.0
O A:HOH521 4.6 22.4 1.0
N A:GLU154 4.6 12.8 1.0
O A:HOH470 4.6 14.9 1.0
NE2 A:GLN151 4.7 23.2 1.0
CA A:ASP153 4.7 13.5 1.0
O A:HOH641 4.7 25.9 1.0
CG A:PHE152 5.0 12.7 1.0

Calcium binding site 3 out of 3 in 3h0o

Go back to Calcium Binding Sites List in 3h0o
Calcium binding site 3 out of 3 in the The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:15.0
occ:0.50
 O A:HOH672 2.2 28.8 1.0
O A:LYS200 2.3 13.7 1.0
O A:HOH669 2.3 28.4 1.0
OD1 A:ASP202 2.3 22.2 1.0
O A:HOH420 2.4 27.1 1.0
O A:HOH617 2.9 25.5 1.0
C A:LYS200 3.5 13.8 1.0
CG A:ASP202 3.5 20.7 1.0
CB A:ASP202 4.1 16.8 1.0
N A:ASP202 4.1 15.0 1.0
C A:GLY201 4.3 14.0 1.0
CA A:GLY201 4.4 14.6 1.0
N A:GLY201 4.4 13.0 1.0
CA A:LYS200 4.4 12.3 1.0
N A:LYS200 4.4 11.5 1.0
CB A:LYS200 4.5 13.3 1.0
O A:HOH418 4.5 29.6 1.0
OD2 A:ASP202 4.6 21.6 1.0
OD2 A:ASP214 4.6 23.5 1.0
OH A:TYR13 4.7 15.1 1.0
CA A:ASP202 4.8 15.0 1.0
O A:HOH419 4.8 29.5 1.0
CB A:ASP214 4.9 17.0 1.0
O A:GLY201 4.9 14.5 1.0
O A:HOH640 5.0 30.2 1.0

Reference:

L.C.Tsai, C.H.Hsiao, H.C.Huang. The Importance of Ch-Pi Stacking Interactions Between Carbohydrate and Aromatic Residues in Truncated Fibrobacter Succinogenes 1,3-1,4-Beta-D-Glucanase To Be Published.
Page generated: Sat Jul 13 10:51:36 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy