Calcium in PDB 3hah: Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice)

The structure of Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice), PDB code: 3hah was solved by Q.Wang, M.V.A.S.Navarro, G.Peng, K.R.Rajashankar, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	48.07 / 2.77
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	160.009, 85.457, 88.392, 90.00, 117.56, 90.00
R / Rfree (%)	21.5 / 26

The binding sites of Calcium atom in the Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice) (pdb code 3hah). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice), PDB code: 3hah:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca400 b:49.5 occ:1.00 O A:GLN76 2.7 51.0 1.0 O A:GLY74 2.7 51.4 1.0 O A:GLU72 2.8 50.7 1.0 OE1 A:GLU81 2.8 51.8 1.0 O A:ILE71 2.9 55.0 1.0 O A:HOH344 3.4 37.0 1.0 C A:GLU72 3.5 54.2 1.0 CD A:GLU81 3.5 49.2 1.0 C A:GLY74 3.6 56.7 1.0 O A:HOH364 3.6 49.6 1.0 C A:GLN76 3.7 53.7 1.0 N A:GLY74 3.9 48.5 1.0 N A:GLN76 4.0 48.7 1.0 C A:ILE71 4.1 49.3 1.0 CA A:GLU72 4.1 52.9 1.0 CA A:GLY74 4.2 49.8 1.0 OE2 A:GLU81 4.2 51.9 1.0 CG A:GLU81 4.2 47.7 1.0 CA A:GLN76 4.4 50.7 1.0 N A:LYS73 4.5 50.6 1.0 C A:LYS73 4.5 52.0 1.0 N A:PRO75 4.5 56.7 1.0 N A:GLU72 4.5 48.4 1.0 C A:PRO75 4.6 51.4 1.0 N A:TYR77 4.8 54.7 1.0 CA A:PRO75 4.8 49.9 1.0 CB A:GLN76 4.8 52.9 1.0 CA A:LYS73 4.9 46.5 1.0 CA A:TYR77 5.0 52.6 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human PACSIN1 F-Bar Domain (C2 Lattice) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca400 b:57.8 occ:1.00 O B:GLN76 2.6 51.2 1.0 O B:ILE71 2.7 60.0 1.0 OE1 B:GLU81 2.8 54.0 1.0 O B:GLU72 2.8 55.2 1.0 O B:GLY74 2.8 52.6 1.0 CD B:GLU81 3.4 55.8 1.0 C B:GLU72 3.6 58.4 1.0 C B:GLN76 3.7 50.2 1.0 C B:ILE71 3.8 55.6 1.0 C B:GLY74 3.8 55.1 1.0 CA B:GLU72 3.9 57.3 1.0 CG B:GLU81 4.0 53.2 1.0 N B:GLN76 4.0 53.0 1.0 OE2 B:GLU81 4.1 56.8 1.0 N B:GLY74 4.2 56.1 1.0 N B:GLU72 4.3 53.2 1.0 CA B:GLN76 4.4 53.1 1.0 CA B:GLY74 4.6 54.1 1.0 C B:PRO75 4.6 54.8 1.0 N B:LYS73 4.7 54.4 1.0 N B:PRO75 4.8 53.8 1.0 N B:TYR77 4.8 47.4 1.0 CB B:GLN76 4.8 50.9 1.0 C B:LYS73 4.9 54.5 1.0 CG2 B:ILE71 5.0 49.7 1.0 CA B:TYR77 5.0 52.3 1.0

Q.Wang, M.V.Navarro, G.Peng, E.Molinelli, S.Lin Goh, B.L.Judson, K.R.Rajashankar, H.Sondermann. Molecular Mechanism of Membrane Constriction and Tubulation Mediated By the F-Bar Protein Pacsin/Syndapin. Proc.Natl.Acad.Sci.Usa V. 106 12700 2009.
ISSN: ISSN 0027-8424
PubMed: 19549836
DOI: 10.1073/PNAS.0902974106