Calcium in PDB 3haj: Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice)

The structure of Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice), PDB code: 3haj was solved by Q.Wang, M.V.A.S.Navarro, G.Peng, K.R.Rajashankar, H.Sondermann, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	44.72 / 2.78
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	31.295, 88.395, 357.722, 90.00, 90.00, 90.00
R / Rfree (%)	22.4 / 27.4

The binding sites of Calcium atom in the Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice) (pdb code 3haj). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice), PDB code: 3haj:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca488 b:69.1 occ:1.00 O A:GLN76 2.8 68.2 1.0 O A:VAL71 2.8 83.5 1.0 O A:GLU72 2.8 70.7 1.0 O A:GLY74 2.9 70.0 1.0 OE1 A:GLU81 3.1 82.5 1.0 CE2 A:TYR77 3.1 41.7 1.0 C A:GLU72 3.3 44.6 1.0 CZ A:TYR77 3.4 79.6 1.0 CD2 A:TYR77 3.4 66.6 1.0 CA A:GLU72 3.6 73.9 1.0 C A:GLY74 3.8 57.9 1.0 C A:GLN76 3.8 59.9 1.0 CD A:GLU81 3.8 68.5 1.0 C A:VAL71 3.8 50.0 1.0 N A:GLY74 3.9 93.8 1.0 OH A:TYR77 3.9 39.5 1.0 CE1 A:TYR77 3.9 46.7 1.0 CG A:TYR77 4.0 63.5 1.0 CD1 A:TYR77 4.2 47.0 1.0 N A:GLU72 4.2 55.4 1.0 CG A:GLU81 4.3 39.8 1.0 CA A:GLY74 4.3 48.7 1.0 N A:LYS73 4.3 31.3 1.0 N A:GLN76 4.4 54.3 1.0 C A:LYS73 4.6 71.0 1.0 CA A:GLN76 4.6 75.4 1.0 OE2 A:GLU81 4.6 94.5 1.0 N A:TYR77 4.6 44.2 1.0 C A:PRO75 4.7 41.5 1.0 N A:PRO75 4.7 58.6 1.0 CA A:TYR77 4.7 56.2 1.0 CA A:LYS73 4.9 42.6 1.0 CB A:GLU72 4.9 48.3 1.0 CB A:TYR77 4.9 16.7 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human PACSIN2 F-Bar Domain (P212121 Lattice) within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca488 b:68.9 occ:1.00 O B:GLN76 2.6 59.7 1.0 O B:GLU72 2.7 52.2 1.0 O B:VAL71 2.8 49.8 1.0 O B:GLY74 3.0 69.4 1.0 OE1 B:GLU81 3.0 60.8 1.0 CE2 B:TYR77 3.2 47.5 1.0 C B:GLU72 3.3 44.5 1.0 CD2 B:TYR77 3.4 60.5 1.0 CA B:GLU72 3.5 59.7 1.0 CD B:GLU81 3.5 51.6 1.0 CZ B:TYR77 3.6 58.4 1.0 C B:GLN76 3.7 44.9 1.0 C B:VAL71 3.8 39.2 1.0 O B:HOH496 3.9 64.3 1.0 C B:GLY74 3.9 39.8 1.0 OE2 B:GLU81 4.1 49.6 1.0 CG B:TYR77 4.1 0.5 1.0 OH B:TYR77 4.1 41.2 1.0 N B:GLU72 4.1 46.9 1.0 CG B:GLU81 4.2 25.9 1.0 N B:GLN76 4.2 47.2 1.0 CE1 B:TYR77 4.3 50.1 1.0 N B:LYS73 4.3 46.4 1.0 N B:GLY74 4.3 35.9 1.0 CA B:GLN76 4.4 38.0 1.0 CD1 B:TYR77 4.5 90.2 1.0 C B:LYS73 4.5 48.6 1.0 N B:TYR77 4.6 49.9 1.0 C B:PRO75 4.6 47.1 1.0 CA B:GLY74 4.6 40.4 1.0 CA B:TYR77 4.7 81.9 1.0 CB B:GLU72 4.7 59.0 1.0 CA B:LYS73 4.8 39.0 1.0 N B:PRO75 4.8 38.4 1.0 O B:LYS73 4.9 75.6 1.0 CB B:GLN76 5.0 50.9 1.0

Q.Wang, M.V.Navarro, G.Peng, E.Molinelli, S.Lin Goh, B.L.Judson, K.R.Rajashankar, H.Sondermann. Molecular Mechanism of Membrane Constriction and Tubulation Mediated By the F-Bar Protein Pacsin/Syndapin. Proc.Natl.Acad.Sci.Usa V. 106 12700 2009.
ISSN: ISSN 0027-8424
PubMed: 19549836
DOI: 10.1073/PNAS.0902974106