Atomistry » Calcium » PDB 3hjb-3hz3 » 3hz2
Atomistry »
  Calcium »
    PDB 3hjb-3hz3 »
      3hz2 »

Calcium in PDB 3hz2: Crystal Structure of A Betagamma-Crystallin From An Archaea

Protein crystallography data

The structure of Crystal Structure of A Betagamma-Crystallin From An Archaea, PDB code: 3hz2 was solved by P.Aravind, R.Sankaranarayanan, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.00 / 1.86
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 29.300, 54.202, 54.179, 85.81, 74.31, 74.32
R / Rfree (%) 17.2 / 21.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Betagamma-Crystallin From An Archaea (pdb code 3hz2). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Crystal Structure of A Betagamma-Crystallin From An Archaea, PDB code: 3hz2:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 1 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca101

b:9.3
occ:1.00
 OD1 A:ASN76 2.4 6.0 1.0
OG A:SER36 2.5 8.4 1.0
O A:GLU9 2.5 8.4 1.0
O A:LYS34 2.5 8.2 1.0
O A:HOH230 2.6 8.3 1.0
O A:HOH237 2.7 16.1 1.0
O A:HOH96 2.7 13.9 1.0
CG A:ASN76 3.5 8.3 1.0
C A:LYS34 3.6 9.9 1.0
CB A:SER36 3.6 8.3 1.0
C A:GLU9 3.7 10.0 1.0
ND2 A:ASN76 3.9 6.3 1.0
CA A:LYS34 4.1 11.0 1.0
OD1 A:ASP75 4.2 9.3 1.0
O A:HOH242 4.2 10.5 1.0
N A:SER36 4.3 7.5 1.0
OD2 A:ASP75 4.4 12.6 1.0
C A:ILE35 4.5 9.5 1.0
CA A:HIS10 4.5 9.6 1.0
CA A:SER36 4.5 8.7 1.0
N A:HIS10 4.6 9.4 1.0
CA A:GLU9 4.6 9.6 1.0
O A:HOH261 4.6 18.8 1.0
CG A:GLU9 4.6 12.4 1.0
O A:HOH86 4.6 7.0 1.0
ND1 A:HIS10 4.7 13.5 1.0
N A:ILE35 4.7 9.4 1.0
CB A:LYS34 4.7 12.4 1.0
CG A:ASP75 4.7 11.8 1.0
CB A:ASN76 4.7 8.5 1.0
O A:ILE35 4.8 11.2 1.0
CA A:ILE35 5.0 7.9 1.0
CA A:ASN76 5.0 9.6 1.0

Calcium binding site 2 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 2 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca102

b:14.2
occ:1.00
 O A:GLU49 2.4 10.2 1.0
OD1 A:ASP33 2.5 12.0 1.0
O A:SER77 2.5 10.4 1.0
OG A:SER79 2.6 10.6 1.0
O A:HOH272 2.8 41.4 1.0
O A:HOH90 2.8 21.9 1.0
C A:SER77 3.4 10.5 1.0
CG A:ASP33 3.5 16.3 1.0
C A:GLU49 3.6 9.7 1.0
CB A:SER79 3.7 9.9 1.0
OD2 A:ASP33 3.9 20.4 1.0
CA A:SER77 3.9 10.4 1.0
CA A:GLU49 4.3 10.7 1.0
N A:SER79 4.3 9.6 1.0
C A:ILE78 4.3 8.8 1.0
O A:HOH103 4.4 33.9 1.0
CD2 A:TYR50 4.4 17.3 1.0
N A:ILE78 4.5 8.9 1.0
O A:ILE78 4.5 10.6 1.0
CB A:SER77 4.5 12.6 1.0
CA A:SER79 4.5 8.3 1.0
OD1 A:ASN32 4.6 16.1 1.0
N A:TYR50 4.6 10.1 1.0
CA A:TYR50 4.7 10.6 1.0
CB A:GLU49 4.7 12.6 1.0
CB A:ASP33 4.8 13.7 1.0
CA A:ILE78 4.8 9.4 1.0
O A:HOH93 4.9 16.1 1.0
CE2 A:TYR50 4.9 18.7 1.0
O B:HOH100 5.0 15.1 1.0

Calcium binding site 3 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 3 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca103

b:9.9
occ:1.00
 OD1 B:ASN76 2.4 6.8 1.0
O B:GLU9 2.5 8.7 1.0
OG B:SER36 2.5 8.9 1.0
O B:LYS34 2.5 6.5 1.0
O B:HOH85 2.5 8.4 1.0
O B:HOH88 2.6 10.8 1.0
O B:HOH110 2.7 13.6 1.0
CG B:ASN76 3.5 8.2 1.0
C B:LYS34 3.6 8.1 1.0
CB B:SER36 3.6 8.6 1.0
C B:GLU9 3.7 10.5 1.0
ND2 B:ASN76 4.0 7.9 1.0
CA B:LYS34 4.1 9.5 1.0
O B:HOH106 4.2 10.4 1.0
OD1 B:ASP75 4.3 11.5 1.0
N B:SER36 4.3 6.5 1.0
OD2 B:ASP75 4.5 11.7 1.0
O B:HOH108 4.5 16.4 1.0
C B:ILE35 4.5 7.9 1.0
CA B:SER36 4.5 7.6 1.0
CA B:GLU9 4.5 10.0 1.0
CG B:GLU9 4.5 11.5 1.0
CA B:HIS10 4.6 9.4 1.0
N B:HIS10 4.6 9.7 1.0
CB B:LYS34 4.6 10.8 1.0
N B:ILE35 4.7 7.3 1.0
O B:HOH89 4.7 9.0 1.0
ND1 B:HIS10 4.7 12.3 1.0
CG B:ASP75 4.7 11.1 1.0
CB B:ASN76 4.8 8.9 1.0
O B:ILE35 4.8 10.5 1.0
CA B:ILE35 4.9 7.9 1.0
CA B:ASN76 5.0 9.9 1.0
N B:ASN76 5.0 9.9 1.0

Calcium binding site 4 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 4 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca104

b:12.2
occ:1.00
 O B:GLU49 2.4 11.3 1.0
O B:SER77 2.5 10.4 1.0
OD1 B:ASP33 2.5 13.9 1.0
OG B:SER79 2.6 10.9 1.0
O B:HOH93 2.7 18.2 1.0
O B:HOH254 2.7 34.3 1.0
C B:SER77 3.4 11.0 1.0
CG B:ASP33 3.5 16.6 1.0
C B:GLU49 3.6 9.7 1.0
CB B:SER79 3.7 9.3 1.0
CA B:SER77 3.9 10.7 1.0
OD2 B:ASP33 3.9 18.6 1.0
CA B:GLU49 4.3 10.2 1.0
N B:SER79 4.3 9.2 1.0
C B:ILE78 4.3 8.2 1.0
N B:ILE78 4.4 9.0 1.0
CD2 B:TYR50 4.5 17.2 1.0
CB B:SER77 4.5 13.1 1.0
CA B:SER79 4.5 8.0 1.0
O B:ILE78 4.5 9.3 1.0
OD1 B:ASN32 4.6 15.8 1.0
O B:HOH444 4.6 37.3 1.0
N B:TYR50 4.6 10.9 1.0
CB B:GLU49 4.7 12.7 1.0
CA B:TYR50 4.7 10.2 1.0
CA B:ILE78 4.8 8.9 1.0
CB B:ASP33 4.8 13.7 1.0
CE2 B:TYR50 4.9 19.1 1.0
O B:HOH102 4.9 15.5 1.0
CA B:ASP33 5.0 10.7 1.0

Calcium binding site 5 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 5 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca105

b:10.3
occ:1.00
 OD1 C:ASN76 2.4 6.5 1.0
O C:GLU9 2.5 9.7 1.0
OG C:SER36 2.5 8.0 1.0
O C:LYS34 2.6 8.9 1.0
O C:HOH85 2.6 9.0 1.0
O C:HOH231 2.6 12.9 1.0
O C:HOH241 2.8 12.1 1.0
CG C:ASN76 3.5 7.0 1.0
CB C:SER36 3.6 7.5 1.0
C C:LYS34 3.6 9.8 1.0
C C:GLU9 3.7 9.9 1.0
O D:TYR53 3.9 9.6 1.0
ND2 C:ASN76 3.9 5.0 1.0
CA C:LYS34 4.2 11.2 1.0
O C:HOH93 4.2 9.2 1.0
OD1 C:ASP75 4.2 9.6 1.0
N C:SER36 4.3 6.6 1.0
OD2 C:ASP75 4.4 11.9 1.0
CA C:HIS10 4.5 9.3 1.0
C C:ILE35 4.5 8.3 1.0
CA C:SER36 4.5 7.5 1.0
CG C:GLU9 4.5 11.6 1.0
N C:HIS10 4.5 8.9 1.0
CA C:GLU9 4.6 9.8 1.0
O C:HOH94 4.6 18.6 1.0
ND1 C:HIS10 4.6 11.7 1.0
O C:HOH233 4.6 8.0 1.0
CB C:LYS34 4.7 12.6 1.0
N C:ILE35 4.7 9.3 1.0
CG C:ASP75 4.7 10.2 1.0
CB C:ASN76 4.8 8.6 1.0
O C:ILE35 4.8 10.6 1.0
C D:TYR53 4.9 9.7 1.0
CA C:ILE35 5.0 8.0 1.0

Calcium binding site 6 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 6 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca106

b:12.4
occ:1.00
 O C:GLU49 2.4 11.9 1.0
OD1 C:ASP33 2.5 13.0 1.0
O C:SER77 2.5 9.9 1.0
OG C:SER79 2.6 8.9 1.0
O C:HOH239 2.7 18.4 1.0
O C:HOH249 2.7 31.2 1.0
C C:SER77 3.4 11.0 1.0
CG C:ASP33 3.5 15.9 1.0
C C:GLU49 3.6 10.3 1.0
CB C:SER79 3.7 8.8 1.0
OD2 C:ASP33 3.9 17.9 1.0
CA C:SER77 3.9 10.8 1.0
CA C:GLU49 4.3 10.8 1.0
N C:SER79 4.3 9.7 1.0
C C:ILE78 4.3 9.2 1.0
N C:ILE78 4.5 9.0 1.0
O C:ILE78 4.5 11.3 1.0
CD2 C:TYR50 4.5 17.1 1.0
CA C:SER79 4.5 7.9 1.0
CB C:SER77 4.5 12.9 1.0
N C:TYR50 4.6 10.5 1.0
OD1 C:ASN32 4.6 17.0 1.0
CB C:GLU49 4.7 11.6 1.0
CA C:TYR50 4.7 11.2 1.0
CA C:ILE78 4.8 9.1 1.0
CB C:ASP33 4.8 13.2 1.0
O C:HOH277 4.9 19.3 1.0
CE2 C:TYR50 4.9 18.8 1.0
O C:HOH90 5.0 12.5 1.0
CA C:ASP33 5.0 10.4 1.0

Calcium binding site 7 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 7 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca107

b:9.5
occ:1.00
 OD1 D:ASN76 2.4 7.8 1.0
OG D:SER36 2.5 8.7 1.0
O D:GLU9 2.5 9.7 1.0
O D:LYS34 2.5 9.0 1.0
O D:HOH87 2.6 9.7 1.0
O D:HOH85 2.7 13.0 1.0
O D:HOH97 2.7 11.8 1.0
CG D:ASN76 3.5 8.6 1.0
C D:LYS34 3.6 9.7 1.0
CB D:SER36 3.6 8.1 1.0
C D:GLU9 3.7 10.6 1.0
O B:TYR53 3.9 9.5 1.0
ND2 D:ASN76 3.9 6.5 1.0
CA D:LYS34 4.1 10.7 1.0
OD2 D:ASP75 4.2 9.9 1.0
O B:HOH191 4.2 10.6 1.0
N D:SER36 4.3 6.4 1.0
C D:ILE35 4.5 8.4 1.0
O D:HOH99 4.5 20.0 1.0
CA D:SER36 4.5 8.6 1.0
OD1 D:ASP75 4.5 13.1 1.0
CA D:HIS10 4.6 9.9 1.0
CA D:GLU9 4.6 10.8 1.0
CG D:GLU9 4.6 13.3 1.0
N D:HIS10 4.6 10.3 1.0
ND1 D:HIS10 4.6 12.4 1.0
CB D:LYS34 4.6 12.4 1.0
O D:HOH89 4.7 7.2 1.0
N D:ILE35 4.7 9.5 1.0
CG D:ASP75 4.7 11.1 1.0
CB D:ASN76 4.8 9.9 1.0
O D:ILE35 4.8 9.2 1.0
C B:TYR53 5.0 10.1 1.0
CA D:ILE35 5.0 7.7 1.0

Calcium binding site 8 out of 8 in 3hz2

Go back to Calcium Binding Sites List in 3hz2
Calcium binding site 8 out of 8 in the Crystal Structure of A Betagamma-Crystallin From An Archaea


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of A Betagamma-Crystallin From An Archaea within 5.0Å range:
probe atom residue distance (Å) B Occ
D:Ca108

b:12.1
occ:1.00
 O D:GLU49 2.4 11.3 1.0
O D:SER77 2.5 9.7 1.0
OD2 D:ASP33 2.5 11.6 1.0
OG D:SER79 2.6 9.0 1.0
O D:HOH98 2.7 20.1 1.0
O D:HOH257 2.7 33.6 1.0
C D:SER77 3.4 10.2 1.0
CG D:ASP33 3.5 16.2 1.0
C D:GLU49 3.5 9.5 1.0
CB D:SER79 3.7 8.4 1.0
OD1 D:ASP33 3.8 20.6 1.0
CA D:SER77 3.9 10.1 1.0
CA D:GLU49 4.2 10.2 1.0
N D:SER79 4.3 9.4 1.0
C D:ILE78 4.3 9.1 1.0
CD2 D:TYR50 4.4 16.7 1.0
N D:ILE78 4.5 8.5 1.0
CA D:SER79 4.5 8.9 1.0
O D:HOH91 4.5 36.1 1.0
OD1 D:ASN32 4.5 16.9 1.0
N D:TYR50 4.5 10.5 1.0
O D:ILE78 4.5 10.6 1.0
CB D:SER77 4.5 12.2 1.0
CA D:TYR50 4.6 11.8 1.0
CB D:GLU49 4.7 13.0 1.0
CA D:ILE78 4.8 9.4 1.0
CB D:ASP33 4.8 13.4 1.0
CE2 D:TYR50 4.9 18.4 1.0
O D:HOH100 4.9 17.7 1.0
CA D:ASP33 5.0 10.1 1.0

Reference:

P.Aravind, A.Mishra, S.K.Suman, M.K.Jobby, R.Sankaranarayanan, Y.Sharma. The Betagamma-Crystallin Superfamily Contains A Universal Motif For Binding Calcium Biochemistry V. 48 12180 2009.
ISSN: ISSN 0006-2960
PubMed: 19921810
DOI: 10.1021/BI9017076
Page generated: Sat Jul 13 11:19:14 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy