Calcium in PDB 3ibz: Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2)

The structure of Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2), PDB code: 3ibz was solved by M.Klimecka, M.Chruszcz, M.Cymborowski, X.Xu, H.Cui, A.Joachimiak, A.Edwards, A.Savchenko, W.Minor, Midwest Center For Structural Genomics(Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	49.94 / 1.78
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	34.836, 61.456, 85.713, 90.00, 90.00, 90.00
R / Rfree (%)	16.3 / 20

The binding sites of Calcium atom in the Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2) (pdb code 3ibz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2), PDB code: 3ibz:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca192 b:15.7 occ:1.00 OD1 A:ASP78 2.2 3.6 1.0 O A:LEU41 2.3 3.1 1.0 OE2 A:GLU89 2.3 2.0 1.0 OD1 A:ASP42 2.4 3.5 1.0 OD1 A:ASP40 2.4 2.0 1.0 O A:ASN79 2.4 2.0 1.0 C A:ASN79 3.4 3.1 1.0 C A:LEU41 3.4 2.0 1.0 CG A:ASP78 3.4 5.3 1.0 CG A:ASP42 3.4 3.7 1.0 CD A:GLU89 3.5 6.8 1.0 CG A:ASP40 3.6 5.4 1.0 N A:ASN79 3.7 3.2 1.0 O A:HOH206 3.8 9.8 1.0 CA A:ASP42 4.0 2.4 1.0 OE1 A:GLU89 4.0 4.3 1.0 OD2 A:ASP78 4.1 7.8 1.0 N A:LEU41 4.1 2.0 1.0 N A:ASP42 4.1 2.9 1.0 CA A:ASN79 4.2 2.9 1.0 OD2 A:ASP40 4.2 3.8 1.0 N A:ILE80 4.3 2.1 1.0 OD2 A:ASP42 4.3 7.9 1.0 CH2 A:TRP29 4.3 2.4 1.0 C A:ASP40 4.3 3.5 1.0 CA A:ILE80 4.3 2.0 1.0 C A:ASP78 4.3 5.0 1.0 CB A:ASP42 4.3 4.0 1.0 CA A:ASP78 4.4 4.9 1.0 CA A:LEU41 4.5 2.2 1.0 CB A:ASP78 4.5 5.0 1.0 CG2 A:ILE80 4.6 2.0 1.0 CA A:ASP40 4.6 2.0 1.0 CG A:GLU89 4.6 3.8 1.0 CZ2 A:TRP29 4.7 2.0 1.0 CB A:ASP40 4.7 3.0 1.0 O A:ASP40 4.8 4.3 1.0 CB A:ASN79 4.9 3.1 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2) within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca193 b:23.6 occ:1.00 O A:TRP29 2.2 3.3 1.0 O A:GLY82 2.3 2.0 1.0 O A:GLY84 2.3 10.2 1.0 O A:HOH231 2.4 2.0 1.0 OD2 A:ASP88 2.4 2.1 1.0 O A:HOH240 2.5 2.0 1.0 OD1 A:ASP88 2.7 8.0 1.0 CG A:ASP88 2.9 5.1 1.0 C A:TRP29 3.4 3.0 1.0 C A:GLY82 3.4 3.4 1.0 C A:GLY84 3.5 9.9 1.0 N A:TRP29 3.8 2.5 1.0 N A:GLY84 4.0 9.2 1.0 CA A:GLY82 4.0 2.0 1.0 C A:GLU83 4.2 8.8 1.0 CA A:TRP29 4.3 2.2 1.0 CA A:GLY84 4.3 8.6 1.0 N A:ASP30 4.4 4.0 1.0 O A:HOH250 4.4 8.9 1.0 O A:HOH228 4.4 7.4 1.0 CB A:ASP88 4.4 3.2 1.0 O A:GLY86 4.4 5.1 1.0 N A:GLU83 4.4 5.2 1.0 O A:GLU83 4.5 8.0 1.0 CA A:ASP30 4.5 4.1 1.0 N A:GLU85 4.5 10.7 1.0 OD1 A:ASP30 4.5 12.8 1.0 CA A:GLU85 4.6 11.7 1.0 CA A:GLU83 4.7 7.5 1.0 O A:HOH214 4.8 16.1 1.0 C A:GLU85 4.9 9.9 1.0 C A:GLY28 4.9 2.7 1.0 CA A:GLY28 4.9 2.0 1.0

M.Klimecka, M.Chruszcz, M.Cymborowski, X.Xu, H.Cui, A.Joachimiak, A.Edwards, A.Savchenko, W.Minor. Crystal Structure of Putative Tellurium Resistant Like Protein (Terd) From Streptomyces Coelicolor A3(2) To Be Published.