Atomistry » Calcium » PDB 3iti-3k3w » 3j41
Atomistry »
  Calcium »
    PDB 3iti-3k3w »
      3j41 »

Calcium in PDB 3j41: Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy

Calcium Binding Sites:

The binding sites of Calcium atom in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy (pdb code 3j41). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy, PDB code: 3j41:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 1 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca201

b:0.0
occ:1.00
 OD2 E:ASP22 2.5 0.0 1.0
OD1 E:ASP20 2.5 0.0 1.0
OD2 E:ASP24 2.5 0.0 1.0
OD2 E:ASP20 2.6 0.0 1.0
OD1 E:ASP24 2.6 0.0 1.0
O E:THR26 2.6 0.0 1.0
CG E:ASP24 3.0 0.0 1.0
CG E:ASP20 3.0 0.0 1.0
CG E:ASP22 3.5 0.0 1.0
C E:THR26 3.6 0.0 1.0
N E:THR26 3.8 0.0 1.0
N E:ASP24 3.9 0.0 1.0
N E:GLY25 4.2 0.0 1.0
CB E:ASP20 4.2 0.0 1.0
CB E:ASP24 4.2 0.0 1.0
CA E:THR26 4.2 0.0 1.0
N E:GLY23 4.3 0.0 1.0
C E:ASP22 4.3 0.0 1.0
CB E:ASP22 4.3 0.0 1.0
OG1 E:THR26 4.3 0.0 1.0
OD1 E:ASP22 4.3 0.0 1.0
CA E:ASP24 4.3 0.0 1.0
C E:ASP24 4.4 0.0 1.0
CA E:ASP20 4.5 0.0 1.0
O E:ASP22 4.6 0.0 1.0
CA E:ASP22 4.7 0.0 1.0
C E:GLY23 4.7 0.0 1.0
N E:ILE27 4.7 0.0 1.0
C E:GLY25 4.8 0.0 1.0
N E:ASP22 4.9 0.0 1.0
CB E:THR26 4.9 0.0 1.0
CA E:GLY25 5.0 0.0 1.0

Calcium binding site 2 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 2 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca202

b:0.0
occ:1.00
 OD1 E:ASP58 2.5 0.0 1.0
OD1 E:ASP64 2.5 0.0 1.0
OD2 E:ASP58 2.5 0.0 1.0
OD2 E:ASP64 2.6 0.0 1.0
OD1 E:ASN60 2.7 0.0 1.0
O E:THR62 2.7 0.0 1.0
CG E:ASP58 3.0 0.0 1.0
CG E:ASP64 3.0 0.0 1.0
CG E:ASN60 3.5 0.0 1.0
ND2 E:ASN60 3.6 0.0 1.0
C E:THR62 3.9 0.0 1.0
CB E:ASP58 4.2 0.0 1.0
CG E:GLU67 4.3 0.0 1.0
N E:ASP64 4.4 0.0 1.0
CB E:ASP64 4.5 0.0 1.0
CB E:GLU67 4.5 0.0 1.0
N E:ILE63 4.8 0.0 1.0
CB E:ASN60 4.8 0.0 1.0
OG1 E:THR62 4.9 0.0 1.0
CA E:ILE63 4.9 0.0 1.0
CB E:THR62 4.9 0.0 1.0
CA E:THR62 4.9 0.0 1.0

Calcium binding site 3 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 3 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca203

b:0.0
occ:1.00
 OD2 E:ASP93 2.6 0.0 1.0
OD1 E:ASP93 2.6 0.0 1.0
OD1 E:ASN97 2.6 0.0 1.0
OE1 E:GLU104 2.6 0.0 1.0
OD2 E:ASP95 2.6 0.0 1.0
O E:TYR99 2.6 0.0 1.0
OD1 E:ASP95 2.7 0.0 1.0
OE2 E:GLU104 2.7 0.0 1.0
CG E:ASP93 3.0 0.0 1.0
CD E:GLU104 3.1 0.0 1.0
CG E:ASP95 3.1 0.0 1.0
CG E:ASN97 3.7 0.0 1.0
CB E:ASP93 3.8 0.0 1.0
C E:TYR99 3.8 0.0 1.0
N E:ASN97 4.3 0.0 1.0
N E:GLY96 4.3 0.0 1.0
ND2 E:ASN97 4.3 0.0 1.0
CA E:ASP93 4.4 0.0 1.0
CB E:ASP95 4.6 0.0 1.0
CA E:ILE100 4.6 0.0 1.0
CG E:GLU104 4.6 0.0 1.0
N E:SER101 4.6 0.0 1.0
N E:ILE100 4.6 0.0 1.0
OE1 E:GLN135 4.6 0.0 1.0
CB E:ASN97 4.6 0.0 1.0
CA E:TYR99 4.8 0.0 1.0
N E:TYR99 4.8 0.0 1.0
N E:ASP95 4.8 0.0 1.0
N E:LYS94 4.9 0.0 1.0
CA E:ASN97 5.0 0.0 1.0
CA E:GLY96 5.0 0.0 1.0
CB E:TYR99 5.0 0.0 1.0

Calcium binding site 4 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 4 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca204

b:0.0
occ:1.00
 OD1 E:ASP131 2.5 0.0 1.0
OD1 E:ASP133 2.5 0.0 1.0
OD1 E:ASP129 2.5 0.0 1.0
OE1 E:GLU140 2.6 0.0 1.0
OE2 E:GLU140 2.6 0.0 1.0
O E:GLN135 2.6 0.0 1.0
OD2 E:ASP129 2.7 0.0 1.0
CD E:GLU140 3.0 0.0 1.0
CG E:ASP129 3.0 0.0 1.0
CG E:ASP131 3.6 0.0 1.0
C E:GLN135 3.7 0.0 1.0
CG E:ASP133 3.7 0.0 1.0
OD2 E:ASP131 4.0 0.0 1.0
CB E:ASP129 4.2 0.0 1.0
N E:ASP133 4.2 0.0 1.0
N E:GLY132 4.4 0.0 1.0
CG E:GLU140 4.4 0.0 1.0
N E:ASP131 4.4 0.0 1.0
N E:GLN135 4.4 0.0 1.0
CA E:VAL136 4.5 0.0 1.0
N E:VAL136 4.5 0.0 1.0
N E:GLY134 4.5 0.0 1.0
CA E:ASP129 4.5 0.0 1.0
OD2 E:ASP133 4.5 0.0 1.0
N E:ILE130 4.6 0.0 1.0
CB E:ASP131 4.6 0.0 1.0
CB E:ASP133 4.7 0.0 1.0
CE1 E:TYR99 4.7 0.0 1.0
CA E:GLN135 4.7 0.0 1.0
ND2 E:ASN137 4.7 0.0 1.0
CA E:ASP131 4.8 0.0 1.0
C E:ASP131 4.8 0.0 1.0
C E:GLY132 4.9 0.0 1.0
N E:ASN137 4.9 0.0 1.0
C E:ASP129 4.9 0.0 1.0
CA E:ASP133 4.9 0.0 1.0

Calcium binding site 5 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 5 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca201

b:0.0
occ:1.00
 OD2 F:ASP22 2.5 0.0 1.0
OD1 F:ASP20 2.5 0.0 1.0
OD2 F:ASP24 2.5 0.0 1.0
OD2 F:ASP20 2.6 0.0 1.0
OD1 F:ASP24 2.6 0.0 1.0
O F:THR26 2.6 0.0 1.0
CG F:ASP24 3.0 0.0 1.0
CG F:ASP20 3.0 0.0 1.0
CG F:ASP22 3.5 0.0 1.0
C F:THR26 3.6 0.0 1.0
N F:THR26 3.8 0.0 1.0
N F:ASP24 3.9 0.0 1.0
N F:GLY25 4.2 0.0 1.0
CB F:ASP20 4.2 0.0 1.0
CB F:ASP24 4.2 0.0 1.0
CA F:THR26 4.2 0.0 1.0
N F:GLY23 4.3 0.0 1.0
C F:ASP22 4.3 0.0 1.0
OG1 F:THR26 4.3 0.0 1.0
CB F:ASP22 4.3 0.0 1.0
OD1 F:ASP22 4.3 0.0 1.0
CA F:ASP24 4.3 0.0 1.0
C F:ASP24 4.4 0.0 1.0
CA F:ASP20 4.5 0.0 1.0
CA F:ASP22 4.7 0.0 1.0
O F:ASP22 4.7 0.0 1.0
C F:GLY23 4.7 0.0 1.0
N F:ILE27 4.7 0.0 1.0
C F:GLY25 4.8 0.0 1.0
N F:ASP22 4.9 0.0 1.0
CB F:THR26 4.9 0.0 1.0
CA F:GLY25 5.0 0.0 1.0

Calcium binding site 6 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 6 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca202

b:0.0
occ:1.00
 OD1 F:ASP58 2.5 0.0 1.0
OD1 F:ASP64 2.5 0.0 1.0
OD2 F:ASP58 2.6 0.0 1.0
OD2 F:ASP64 2.6 0.0 1.0
OD1 F:ASN60 2.6 0.0 1.0
O F:THR62 2.7 0.0 1.0
CG F:ASP58 3.0 0.0 1.0
CG F:ASP64 3.0 0.0 1.0
CG F:ASN60 3.5 0.0 1.0
ND2 F:ASN60 3.7 0.0 1.0
C F:THR62 4.0 0.0 1.0
CB F:ASP58 4.2 0.0 1.0
N F:ASP64 4.4 0.0 1.0
CG F:GLU67 4.4 0.0 1.0
CB F:ASP64 4.5 0.0 1.0
CB F:GLU67 4.6 0.0 1.0
N F:ILE63 4.8 0.0 1.0
CB F:ASN60 4.8 0.0 1.0
CA F:ILE63 4.9 0.0 1.0
OG1 F:THR62 4.9 0.0 1.0
CB F:THR62 5.0 0.0 1.0
CA F:THR62 5.0 0.0 1.0

Calcium binding site 7 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 7 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca203

b:0.0
occ:1.00
 OD2 F:ASP93 2.6 0.0 1.0
OD1 F:ASP93 2.6 0.0 1.0
OD1 F:ASN97 2.6 0.0 1.0
OD2 F:ASP95 2.6 0.0 1.0
OE1 F:GLU104 2.6 0.0 1.0
O F:TYR99 2.6 0.0 1.0
OD1 F:ASP95 2.7 0.0 1.0
OE2 F:GLU104 2.7 0.0 1.0
CG F:ASP93 3.0 0.0 1.0
CD F:GLU104 3.1 0.0 1.0
CG F:ASP95 3.1 0.0 1.0
CG F:ASN97 3.7 0.0 1.0
CB F:ASP93 3.8 0.0 1.0
C F:TYR99 3.8 0.0 1.0
N F:ASN97 4.3 0.0 1.0
N F:GLY96 4.3 0.0 1.0
ND2 F:ASN97 4.3 0.0 1.0
CA F:ASP93 4.4 0.0 1.0
CB F:ASP95 4.6 0.0 1.0
CA F:ILE100 4.6 0.0 1.0
CG F:GLU104 4.6 0.0 1.0
N F:SER101 4.6 0.0 1.0
N F:ILE100 4.6 0.0 1.0
OE1 F:GLN135 4.6 0.0 1.0
CB F:ASN97 4.6 0.0 1.0
CA F:TYR99 4.8 0.0 1.0
N F:TYR99 4.8 0.0 1.0
N F:ASP95 4.8 0.0 1.0
N F:LYS94 4.9 0.0 1.0
CA F:ASN97 5.0 0.0 1.0
CB F:TYR99 5.0 0.0 1.0
CA F:GLY96 5.0 0.0 1.0

Calcium binding site 8 out of 8 in 3j41

Go back to Calcium Binding Sites List in 3j41
Calcium binding site 8 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca204

b:0.0
occ:1.00
 OD1 F:ASP131 2.5 0.0 1.0
OD1 F:ASP133 2.5 0.0 1.0
OD1 F:ASP129 2.5 0.0 1.0
OE1 F:GLU140 2.6 0.0 1.0
OE2 F:GLU140 2.6 0.0 1.0
O F:GLN135 2.6 0.0 1.0
OD2 F:ASP129 2.7 0.0 1.0
CD F:GLU140 3.0 0.0 1.0
CG F:ASP129 3.0 0.0 1.0
CG F:ASP131 3.6 0.0 1.0
C F:GLN135 3.7 0.0 1.0
CG F:ASP133 3.7 0.0 1.0
OD2 F:ASP131 4.0 0.0 1.0
CB F:ASP129 4.2 0.0 1.0
N F:ASP133 4.2 0.0 1.0
N F:GLY132 4.4 0.0 1.0
CG F:GLU140 4.4 0.0 1.0
N F:ASP131 4.4 0.0 1.0
N F:GLN135 4.4 0.0 1.0
CA F:VAL136 4.5 0.0 1.0
N F:VAL136 4.5 0.0 1.0
N F:GLY134 4.5 0.0 1.0
CA F:ASP129 4.5 0.0 1.0
OD2 F:ASP133 4.5 0.0 1.0
N F:ILE130 4.6 0.0 1.0
CB F:ASP131 4.7 0.0 1.0
CB F:ASP133 4.7 0.0 1.0
CE1 F:TYR99 4.7 0.0 1.0
CA F:GLN135 4.7 0.0 1.0
ND2 F:ASN137 4.7 0.0 1.0
C F:ASP131 4.8 0.0 1.0
CA F:ASP131 4.8 0.0 1.0
C F:GLY132 4.9 0.0 1.0
N F:ASN137 4.9 0.0 1.0
C F:ASP129 4.9 0.0 1.0
CA F:ASP133 4.9 0.0 1.0

Reference:

S.L.Reichow, D.M.Clemens, J.A.Freites, K.L.Nemeth-Cahalan, M.Heyden, D.J.Tobias, J.E.Hall, T.Gonen. Allosteric Mechanism of Water-Channel Gating By Ca(2+)-Calmodulin. Nat.Struct.Mol.Biol. V. 20 1085 2013.
ISSN: ISSN 1545-9993
PubMed: 23893133
DOI: 10.1038/NSMB.2630
Page generated: Sat Jul 13 11:49:11 2024

Last articles

Zn in 9JPJ
Zn in 9JP7
Zn in 9JPK
Zn in 9JPL
Zn in 9GN6
Zn in 9GN7
Zn in 9GKU
Zn in 9GKW
Zn in 9GKX
Zn in 9GL0
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy