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Calcium in PDB 3j41: Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy

Calcium Binding Sites:

The binding sites of Calcium atom in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy (pdb code 3j41). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 8 binding sites of Calcium where determined in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy, PDB code: 3j41:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8;

Calcium binding site 1 out of 8 in 3j41

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Calcium binding site 1 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca201

b:0.0
occ:1.00
 OD2 E:ASP22 2.5 0.0 1.0
OD1 E:ASP20 2.5 0.0 1.0
OD2 E:ASP24 2.5 0.0 1.0
OD2 E:ASP20 2.6 0.0 1.0
OD1 E:ASP24 2.6 0.0 1.0
O E:THR26 2.6 0.0 1.0
CG E:ASP24 3.0 0.0 1.0
CG E:ASP20 3.0 0.0 1.0
CG E:ASP22 3.5 0.0 1.0
C E:THR26 3.6 0.0 1.0
N E:THR26 3.8 0.0 1.0
N E:ASP24 3.9 0.0 1.0
N E:GLY25 4.2 0.0 1.0
CB E:ASP20 4.2 0.0 1.0
CB E:ASP24 4.2 0.0 1.0
CA E:THR26 4.2 0.0 1.0
N E:GLY23 4.3 0.0 1.0
C E:ASP22 4.3 0.0 1.0
CB E:ASP22 4.3 0.0 1.0
OG1 E:THR26 4.3 0.0 1.0
OD1 E:ASP22 4.3 0.0 1.0
CA E:ASP24 4.3 0.0 1.0
C E:ASP24 4.4 0.0 1.0
CA E:ASP20 4.5 0.0 1.0
O E:ASP22 4.6 0.0 1.0
CA E:ASP22 4.7 0.0 1.0
C E:GLY23 4.7 0.0 1.0
N E:ILE27 4.7 0.0 1.0
C E:GLY25 4.8 0.0 1.0
N E:ASP22 4.9 0.0 1.0
CB E:THR26 4.9 0.0 1.0
CA E:GLY25 5.0 0.0 1.0

Calcium binding site 2 out of 8 in 3j41

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Calcium binding site 2 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


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Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca202

b:0.0
occ:1.00
 OD1 E:ASP58 2.5 0.0 1.0
OD1 E:ASP64 2.5 0.0 1.0
OD2 E:ASP58 2.5 0.0 1.0
OD2 E:ASP64 2.6 0.0 1.0
OD1 E:ASN60 2.7 0.0 1.0
O E:THR62 2.7 0.0 1.0
CG E:ASP58 3.0 0.0 1.0
CG E:ASP64 3.0 0.0 1.0
CG E:ASN60 3.5 0.0 1.0
ND2 E:ASN60 3.6 0.0 1.0
C E:THR62 3.9 0.0 1.0
CB E:ASP58 4.2 0.0 1.0
CG E:GLU67 4.3 0.0 1.0
N E:ASP64 4.4 0.0 1.0
CB E:ASP64 4.5 0.0 1.0
CB E:GLU67 4.5 0.0 1.0
N E:ILE63 4.8 0.0 1.0
CB E:ASN60 4.8 0.0 1.0
OG1 E:THR62 4.9 0.0 1.0
CA E:ILE63 4.9 0.0 1.0
CB E:THR62 4.9 0.0 1.0
CA E:THR62 4.9 0.0 1.0

Calcium binding site 3 out of 8 in 3j41

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Calcium binding site 3 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca203

b:0.0
occ:1.00
 OD2 E:ASP93 2.6 0.0 1.0
OD1 E:ASP93 2.6 0.0 1.0
OD1 E:ASN97 2.6 0.0 1.0
OE1 E:GLU104 2.6 0.0 1.0
OD2 E:ASP95 2.6 0.0 1.0
O E:TYR99 2.6 0.0 1.0
OD1 E:ASP95 2.7 0.0 1.0
OE2 E:GLU104 2.7 0.0 1.0
CG E:ASP93 3.0 0.0 1.0
CD E:GLU104 3.1 0.0 1.0
CG E:ASP95 3.1 0.0 1.0
CG E:ASN97 3.7 0.0 1.0
CB E:ASP93 3.8 0.0 1.0
C E:TYR99 3.8 0.0 1.0
N E:ASN97 4.3 0.0 1.0
N E:GLY96 4.3 0.0 1.0
ND2 E:ASN97 4.3 0.0 1.0
CA E:ASP93 4.4 0.0 1.0
CB E:ASP95 4.6 0.0 1.0
CA E:ILE100 4.6 0.0 1.0
CG E:GLU104 4.6 0.0 1.0
N E:SER101 4.6 0.0 1.0
N E:ILE100 4.6 0.0 1.0
OE1 E:GLN135 4.6 0.0 1.0
CB E:ASN97 4.6 0.0 1.0
CA E:TYR99 4.8 0.0 1.0
N E:TYR99 4.8 0.0 1.0
N E:ASP95 4.8 0.0 1.0
N E:LYS94 4.9 0.0 1.0
CA E:ASN97 5.0 0.0 1.0
CA E:GLY96 5.0 0.0 1.0
CB E:TYR99 5.0 0.0 1.0

Calcium binding site 4 out of 8 in 3j41

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Calcium binding site 4 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca204

b:0.0
occ:1.00
 OD1 E:ASP131 2.5 0.0 1.0
OD1 E:ASP133 2.5 0.0 1.0
OD1 E:ASP129 2.5 0.0 1.0
OE1 E:GLU140 2.6 0.0 1.0
OE2 E:GLU140 2.6 0.0 1.0
O E:GLN135 2.6 0.0 1.0
OD2 E:ASP129 2.7 0.0 1.0
CD E:GLU140 3.0 0.0 1.0
CG E:ASP129 3.0 0.0 1.0
CG E:ASP131 3.6 0.0 1.0
C E:GLN135 3.7 0.0 1.0
CG E:ASP133 3.7 0.0 1.0
OD2 E:ASP131 4.0 0.0 1.0
CB E:ASP129 4.2 0.0 1.0
N E:ASP133 4.2 0.0 1.0
N E:GLY132 4.4 0.0 1.0
CG E:GLU140 4.4 0.0 1.0
N E:ASP131 4.4 0.0 1.0
N E:GLN135 4.4 0.0 1.0
CA E:VAL136 4.5 0.0 1.0
N E:VAL136 4.5 0.0 1.0
N E:GLY134 4.5 0.0 1.0
CA E:ASP129 4.5 0.0 1.0
OD2 E:ASP133 4.5 0.0 1.0
N E:ILE130 4.6 0.0 1.0
CB E:ASP131 4.6 0.0 1.0
CB E:ASP133 4.7 0.0 1.0
CE1 E:TYR99 4.7 0.0 1.0
CA E:GLN135 4.7 0.0 1.0
ND2 E:ASN137 4.7 0.0 1.0
CA E:ASP131 4.8 0.0 1.0
C E:ASP131 4.8 0.0 1.0
C E:GLY132 4.9 0.0 1.0
N E:ASN137 4.9 0.0 1.0
C E:ASP129 4.9 0.0 1.0
CA E:ASP133 4.9 0.0 1.0

Calcium binding site 5 out of 8 in 3j41

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Calcium binding site 5 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca201

b:0.0
occ:1.00
 OD2 F:ASP22 2.5 0.0 1.0
OD1 F:ASP20 2.5 0.0 1.0
OD2 F:ASP24 2.5 0.0 1.0
OD2 F:ASP20 2.6 0.0 1.0
OD1 F:ASP24 2.6 0.0 1.0
O F:THR26 2.6 0.0 1.0
CG F:ASP24 3.0 0.0 1.0
CG F:ASP20 3.0 0.0 1.0
CG F:ASP22 3.5 0.0 1.0
C F:THR26 3.6 0.0 1.0
N F:THR26 3.8 0.0 1.0
N F:ASP24 3.9 0.0 1.0
N F:GLY25 4.2 0.0 1.0
CB F:ASP20 4.2 0.0 1.0
CB F:ASP24 4.2 0.0 1.0
CA F:THR26 4.2 0.0 1.0
N F:GLY23 4.3 0.0 1.0
C F:ASP22 4.3 0.0 1.0
OG1 F:THR26 4.3 0.0 1.0
CB F:ASP22 4.3 0.0 1.0
OD1 F:ASP22 4.3 0.0 1.0
CA F:ASP24 4.3 0.0 1.0
C F:ASP24 4.4 0.0 1.0
CA F:ASP20 4.5 0.0 1.0
CA F:ASP22 4.7 0.0 1.0
O F:ASP22 4.7 0.0 1.0
C F:GLY23 4.7 0.0 1.0
N F:ILE27 4.7 0.0 1.0
C F:GLY25 4.8 0.0 1.0
N F:ASP22 4.9 0.0 1.0
CB F:THR26 4.9 0.0 1.0
CA F:GLY25 5.0 0.0 1.0

Calcium binding site 6 out of 8 in 3j41

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Calcium binding site 6 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca202

b:0.0
occ:1.00
 OD1 F:ASP58 2.5 0.0 1.0
OD1 F:ASP64 2.5 0.0 1.0
OD2 F:ASP58 2.6 0.0 1.0
OD2 F:ASP64 2.6 0.0 1.0
OD1 F:ASN60 2.6 0.0 1.0
O F:THR62 2.7 0.0 1.0
CG F:ASP58 3.0 0.0 1.0
CG F:ASP64 3.0 0.0 1.0
CG F:ASN60 3.5 0.0 1.0
ND2 F:ASN60 3.7 0.0 1.0
C F:THR62 4.0 0.0 1.0
CB F:ASP58 4.2 0.0 1.0
N F:ASP64 4.4 0.0 1.0
CG F:GLU67 4.4 0.0 1.0
CB F:ASP64 4.5 0.0 1.0
CB F:GLU67 4.6 0.0 1.0
N F:ILE63 4.8 0.0 1.0
CB F:ASN60 4.8 0.0 1.0
CA F:ILE63 4.9 0.0 1.0
OG1 F:THR62 4.9 0.0 1.0
CB F:THR62 5.0 0.0 1.0
CA F:THR62 5.0 0.0 1.0

Calcium binding site 7 out of 8 in 3j41

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Calcium binding site 7 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca203

b:0.0
occ:1.00
 OD2 F:ASP93 2.6 0.0 1.0
OD1 F:ASP93 2.6 0.0 1.0
OD1 F:ASN97 2.6 0.0 1.0
OD2 F:ASP95 2.6 0.0 1.0
OE1 F:GLU104 2.6 0.0 1.0
O F:TYR99 2.6 0.0 1.0
OD1 F:ASP95 2.7 0.0 1.0
OE2 F:GLU104 2.7 0.0 1.0
CG F:ASP93 3.0 0.0 1.0
CD F:GLU104 3.1 0.0 1.0
CG F:ASP95 3.1 0.0 1.0
CG F:ASN97 3.7 0.0 1.0
CB F:ASP93 3.8 0.0 1.0
C F:TYR99 3.8 0.0 1.0
N F:ASN97 4.3 0.0 1.0
N F:GLY96 4.3 0.0 1.0
ND2 F:ASN97 4.3 0.0 1.0
CA F:ASP93 4.4 0.0 1.0
CB F:ASP95 4.6 0.0 1.0
CA F:ILE100 4.6 0.0 1.0
CG F:GLU104 4.6 0.0 1.0
N F:SER101 4.6 0.0 1.0
N F:ILE100 4.6 0.0 1.0
OE1 F:GLN135 4.6 0.0 1.0
CB F:ASN97 4.6 0.0 1.0
CA F:TYR99 4.8 0.0 1.0
N F:TYR99 4.8 0.0 1.0
N F:ASP95 4.8 0.0 1.0
N F:LYS94 4.9 0.0 1.0
CA F:ASN97 5.0 0.0 1.0
CB F:TYR99 5.0 0.0 1.0
CA F:GLY96 5.0 0.0 1.0

Calcium binding site 8 out of 8 in 3j41

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Calcium binding site 8 out of 8 in the Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Pseudo-Atomic Model of the Aquaporin-0/Calmodulin Complex Derived From Electron Microscopy within 5.0Å range:
probe atom residue distance (Å) B Occ
F:Ca204

b:0.0
occ:1.00
 OD1 F:ASP131 2.5 0.0 1.0
OD1 F:ASP133 2.5 0.0 1.0
OD1 F:ASP129 2.5 0.0 1.0
OE1 F:GLU140 2.6 0.0 1.0
OE2 F:GLU140 2.6 0.0 1.0
O F:GLN135 2.6 0.0 1.0
OD2 F:ASP129 2.7 0.0 1.0
CD F:GLU140 3.0 0.0 1.0
CG F:ASP129 3.0 0.0 1.0
CG F:ASP131 3.6 0.0 1.0
C F:GLN135 3.7 0.0 1.0
CG F:ASP133 3.7 0.0 1.0
OD2 F:ASP131 4.0 0.0 1.0
CB F:ASP129 4.2 0.0 1.0
N F:ASP133 4.2 0.0 1.0
N F:GLY132 4.4 0.0 1.0
CG F:GLU140 4.4 0.0 1.0
N F:ASP131 4.4 0.0 1.0
N F:GLN135 4.4 0.0 1.0
CA F:VAL136 4.5 0.0 1.0
N F:VAL136 4.5 0.0 1.0
N F:GLY134 4.5 0.0 1.0
CA F:ASP129 4.5 0.0 1.0
OD2 F:ASP133 4.5 0.0 1.0
N F:ILE130 4.6 0.0 1.0
CB F:ASP131 4.7 0.0 1.0
CB F:ASP133 4.7 0.0 1.0
CE1 F:TYR99 4.7 0.0 1.0
CA F:GLN135 4.7 0.0 1.0
ND2 F:ASN137 4.7 0.0 1.0
C F:ASP131 4.8 0.0 1.0
CA F:ASP131 4.8 0.0 1.0
C F:GLY132 4.9 0.0 1.0
N F:ASN137 4.9 0.0 1.0
C F:ASP129 4.9 0.0 1.0
CA F:ASP133 4.9 0.0 1.0

Reference:

S.L.Reichow, D.M.Clemens, J.A.Freites, K.L.Nemeth-Cahalan, M.Heyden, D.J.Tobias, J.E.Hall, T.Gonen. Allosteric Mechanism of Water-Channel Gating By Ca(2+)-Calmodulin. Nat.Struct.Mol.Biol. V. 20 1085 2013.
ISSN: ISSN 1545-9993
PubMed: 23893133
DOI: 10.1038/NSMB.2630
Page generated: Sat Jul 13 11:49:11 2024

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