Calcium in PDB 3j7t: Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals

All present enzymatic activity of Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals:
3.6.3.8;

The structure of Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals also contains other interesting chemical elements:

Sodium

(Na)

1 atom

The binding sites of Calcium atom in the Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals (pdb code 3j7t). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals, PDB code: 3j7t:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1001 b:20.0 occ:1.00 OD1 A:ASN796 2.2 20.0 1.0 O A:ILE307 2.3 20.0 1.0 OD2 A:ASP800 2.3 20.0 1.0 OE1 A:GLU309 2.4 20.0 1.0 OE2 A:GLU309 2.4 20.0 1.0 O A:VAL304 2.4 20.0 1.0 O A:ALA305 2.7 20.0 1.0 CD A:GLU309 2.7 20.0 1.0 C A:ALA305 3.1 20.0 1.0 CG A:ASN796 3.2 20.0 1.0 CA A:ALA305 3.3 20.0 1.0 C A:VAL304 3.4 20.0 1.0 C A:ILE307 3.4 20.0 1.0 CG A:ASP800 3.5 20.0 1.0 N A:ALA305 3.8 20.0 1.0 ND2 A:ASN796 3.9 20.0 1.0 N A:ILE307 4.0 20.0 1.0 N A:ALA306 4.1 20.0 1.0 CB A:ASP800 4.1 20.0 1.0 CA A:ILE307 4.2 20.0 1.0 C A:ALA306 4.2 20.0 1.0 CG A:GLU309 4.2 20.0 1.0 CB A:ASN796 4.3 20.0 1.0 ND2 A:ASN768 4.3 20.0 1.0 N A:PRO308 4.4 20.0 1.0 CB A:ILE307 4.5 20.0 1.0 O A:ALA306 4.5 20.0 1.0 OD1 A:ASP800 4.5 20.0 1.0 CA A:PRO308 4.6 20.0 1.0 O A:HOH1176 4.6 20.0 1.0 CB A:ALA305 4.7 20.0 1.0 CA A:ALA306 4.7 20.0 1.0 OE2 A:GLU58 4.7 20.0 1.0 CA A:VAL304 4.8 20.0 1.0 CA A:ASN796 4.8 20.0 1.0 N A:GLU309 4.8 20.0 1.0 O A:ALA303 4.8 20.0 1.0 CG2 A:ILE307 5.0 20.0 1.0 CG1 A:VAL304 5.0 20.0 1.0

Calcium binding site 2 out of 2 in the Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Calcium Atpase Structure with Two Bound Calcium Ions Determined By Electron Crystallography of Thin 3D Crystals within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca1002 b:20.0 occ:1.00 OD1 A:ASN768 2.2 20.0 1.0 O A:HOH1176 2.3 20.0 1.0 O A:HOH1175 2.3 20.0 1.0 OE1 A:GLU908 2.4 20.0 1.0 OG1 A:THR799 2.4 20.0 1.0 OE2 A:GLU771 2.4 20.0 1.0 OD1 A:ASP800 2.4 20.0 1.0 CG A:ASN768 3.4 20.0 1.0 CB A:THR799 3.5 20.0 1.0 CD A:GLU771 3.5 20.0 1.0 CD A:GLU908 3.5 20.0 1.0 CG A:ASP800 3.6 20.0 1.0 OE1 A:GLU771 4.0 20.0 1.0 OE2 A:GLU908 4.0 20.0 1.0 ND2 A:ASN768 4.1 20.0 1.0 N A:ASP800 4.2 20.0 1.0 CB A:SER767 4.2 20.0 1.0 OD2 A:ASP800 4.2 20.0 1.0 N A:ASN768 4.2 20.0 1.0 O A:VAL795 4.4 20.0 1.0 CG1 A:VAL795 4.4 20.0 1.0 CG2 A:THR799 4.4 20.0 1.0 CA A:ASN768 4.4 20.0 1.0 CB A:ASN768 4.5 20.0 1.0 C A:SER767 4.5 20.0 1.0 C A:THR799 4.5 20.0 1.0 CA A:THR799 4.6 20.0 1.0 CA A:ASP800 4.7 20.0 1.0 CB A:ASP800 4.7 20.0 1.0 CG A:GLU771 4.7 20.0 1.0 CG A:GLU908 4.7 20.0 1.0 O A:SER767 4.8 20.0 1.0 O A:ALA305 4.9 20.0 1.0 O A:LEU764 5.0 20.0 1.0 OH A:TYR763 5.0 20.0 1.0

K.Yonekura, K.Kato, M.Ogasawara, M.Tomita, C.Toyoshima. Electron Crystallography of Ultra-Thin 3D Protein Crystals: Atomic Model with Charges Proc.Natl.Acad.Sci.Usa 2015.
ISSN: ESSN 1091-6490