Calcium in PDB 3j9s: Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution

The structure of Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution also contains other interesting chemical elements:

Chlorine	(Cl)	1 atom
Zinc	(Zn)	1 atom

The binding sites of Calcium atom in the Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution (pdb code 3j9s). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution, PDB code: 3j9s:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca503 b:20.0 occ:1.00 O A:HOH670 3.4 20.0 1.0 CG A:PRO235 4.2 20.0 1.0 CD A:PRO235 4.6 20.0 1.0 ND2 A:ASN250 4.8 20.0 1.0

Calcium binding site 2 out of 2 in the Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Single Particle Cryo-Em Structure of Rotavirus VP6 at 2.6 Angstrom Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:20.0 occ:1.00 CG2 A:VAL217 3.6 20.0 1.0 O A:HOH679 3.6 20.0 1.0 OD2 A:ASP286 3.6 20.0 1.0 OD1 A:ASN266 4.2 20.0 1.0 CG A:ASP286 4.4 20.0 1.0 CB A:ASP286 4.5 20.0 1.0

T.Grant, N.Grigorieff. Measuring the Optimal Exposure For Single Particle Cryo-Em Using A 2.6 A Reconstruction of Rotavirus VP6 To Be Published.