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Calcium in PDB 3jq1: Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution

Protein crystallography data

The structure of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution, PDB code: 3jq1 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.49 / 1.55
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 65.650, 94.690, 165.042, 90.00, 90.00, 90.00
R / Rfree (%) 17.2 / 20.9

Other elements in 3jq1:

The structure of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 11 atoms

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 11;

Binding sites:

The binding sites of Calcium atom in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution (pdb code 3jq1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution, PDB code: 3jq1:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 11 in 3jq1

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Calcium binding site 1 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2

b:20.2
occ:0.90
O A:HOH520 2.3 19.8 1.0
O A:THR471 2.4 12.9 1.0
O A:HOH563 2.4 20.3 1.0
O A:HOH959 2.5 28.3 1.0
O A:HOH703 2.5 13.8 1.0
O A:HOH882 2.5 19.6 1.0
O A:HOH701 2.5 14.9 1.0
O A:HOH1019 3.3 29.4 1.0
C A:THR471 3.6 13.2 1.0
OE1 A:GLN314 4.4 11.7 1.0
CA A:THR471 4.5 13.1 1.0
N A:CYS472 4.6 12.9 1.0
O A:CYS472 4.6 14.3 1.0
CA A:CYS472 4.6 13.2 1.0
CB A:THR471 4.6 13.0 1.0
O A:HOH1157 4.7 32.4 1.0
O A:HOH704 4.7 23.3 1.0
O A:HOH734 4.8 14.8 1.0
O A:HOH707 4.8 14.3 1.0
C A:CYS472 4.8 12.4 1.0
O A:HOH714 5.0 14.3 1.0

Calcium binding site 2 out of 11 in 3jq1

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Calcium binding site 2 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca5

b:18.8
occ:0.80
O A:HOH868 2.3 18.6 1.0
OE1 A:GLN211 2.3 15.6 1.0
O A:HOH869 2.3 26.3 1.0
O A:HOH1286 2.4 36.6 1.0
O A:HOH824 2.4 17.3 1.0
O A:LEU200 2.4 10.3 1.0
O A:HOH1136 2.5 31.7 1.0
CD A:GLN211 3.5 13.7 1.0
C A:LEU200 3.6 10.1 1.0
CA A:PRO201 4.1 10.3 1.0
NE2 A:GLN211 4.2 12.0 1.0
N A:PRO201 4.3 10.9 1.0
O A:HOH748 4.3 15.5 1.0
C A:PRO201 4.4 9.9 1.0
CB A:GLN211 4.4 11.3 1.0
O A:HOH1397 4.4 41.0 1.0
CG A:GLN211 4.5 12.4 1.0
N A:ILE202 4.5 10.7 1.0
O A:ALA197 4.6 12.0 1.0
O A:HOH1193 4.6 32.6 1.0
N A:LEU200 4.6 10.4 1.0
CA A:LEU200 4.7 10.1 1.0
O A:HOH1098 4.7 31.2 1.0
O A:SER198 4.8 13.0 1.0
O A:HOH1331 4.8 36.6 1.0
C A:LEU199 4.8 11.8 1.0
O A:PRO201 5.0 11.2 1.0

Calcium binding site 3 out of 11 in 3jq1

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Calcium binding site 3 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca6

b:19.9
occ:0.80
O A:HOH1295 2.3 36.4 1.0
O A:HOH1131 2.3 32.5 1.0
O A:HOH630 2.3 12.3 1.0
O A:HOH559 2.4 19.7 1.0
O A:HOH735 2.4 24.1 1.0
OG A:SER102 2.5 14.7 1.0
O A:HOH712 2.5 14.6 1.0
O A:HOH1126 2.5 31.9 1.0
CB A:SER102 3.7 12.9 1.0
N A:SER102 4.4 11.1 1.0
OD2 A:ASP88 4.4 15.4 1.0
O A:THR100 4.4 13.1 1.0
O A:HOH876 4.5 26.4 1.0
O A:HOH708 4.6 13.8 1.0
CA A:SER102 4.6 12.4 1.0
O A:HOH1307 4.7 36.4 1.0
OD1 A:ASP88 4.7 13.2 1.0
O A:HOH1430 4.7 42.0 1.0
O A:HOH948 4.9 28.0 1.0

Calcium binding site 4 out of 11 in 3jq1

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Calcium binding site 4 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca7

b:11.2
occ:0.90
O A:PHE384 2.3 11.5 1.0
OD1 A:ASP257 2.3 10.6 1.0
O A:HOH562 2.4 10.7 1.0
OE2 A:GLU260 2.5 6.5 1.0
O B:HOH558 2.5 8.6 1.0
OE1 A:GLU260 2.5 7.8 1.0
O A:HOH553 2.6 10.2 1.0
CD A:GLU260 2.8 6.6 1.0
C A:PHE384 3.5 11.2 1.0
CG A:ASP257 3.5 12.0 1.0
NZ B:LYS205 3.9 8.9 1.0
OD1 A:ASN386 4.1 7.7 1.0
O A:HOH898 4.2 18.6 1.0
CG A:GLU260 4.3 6.8 1.0
CB A:ASP257 4.3 9.7 1.0
CA A:PHE384 4.4 12.2 1.0
O A:HOH537 4.4 9.0 1.0
O A:HOH848 4.4 17.3 1.0
OD2 A:ASP257 4.4 13.6 1.0
N A:PHE384 4.4 11.4 1.0
O A:HOH667 4.5 13.2 1.0
CA A:ASP257 4.5 9.9 1.0
N A:ILE385 4.5 10.1 1.0
O A:ASP257 4.5 10.1 1.0
OE2 A:GLU272 4.5 18.4 1.0
CB A:PHE384 4.6 12.2 1.0
CG A:ASN386 4.6 7.6 1.0
CA A:ILE385 4.6 9.3 1.0
N A:ASN386 4.6 8.7 1.0
ND2 A:ASN386 4.9 6.4 1.0
C A:ASP257 4.9 9.3 1.0
CE B:LYS205 5.0 10.5 1.0
O A:HOH644 5.0 12.6 1.0

Calcium binding site 5 out of 11 in 3jq1

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Calcium binding site 5 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca1

b:10.1
occ:1.00
OD1 B:ASP257 2.2 9.7 1.0
O B:PHE384 2.3 10.7 1.0
O B:HOH514 2.4 7.1 1.0
OE2 B:GLU260 2.4 8.3 1.0
O A:HOH515 2.5 7.0 1.0
O B:HOH585 2.5 8.9 1.0
OE1 B:GLU260 2.5 7.0 1.0
CD B:GLU260 2.8 8.7 1.0
CG B:ASP257 3.4 9.6 1.0
C B:PHE384 3.5 9.2 1.0
NZ A:LYS205 3.9 7.7 1.0
OD1 B:ASN386 4.1 7.9 1.0
O B:HOH794 4.2 12.9 1.0
OD2 B:ASP257 4.3 13.5 1.0
CB B:ASP257 4.3 9.0 1.0
CG B:GLU260 4.3 7.1 1.0
O B:HOH527 4.3 7.6 1.0
N B:PHE384 4.4 10.0 1.0
CA B:PHE384 4.4 9.3 1.0
O B:HOH855 4.5 14.3 1.0
O A:HOH693 4.5 23.0 1.0
O B:HOH752 4.5 12.1 1.0
N B:ILE385 4.5 9.0 1.0
CA B:ASP257 4.5 7.6 1.0
OE2 B:GLU272 4.5 11.4 1.0
O B:ASP257 4.5 8.0 1.0
CA B:ILE385 4.6 7.9 1.0
CB B:PHE384 4.6 9.7 1.0
N B:ASN386 4.6 7.1 1.0
CG B:ASN386 4.7 7.1 1.0
CE A:LYS205 4.9 9.9 1.0
C B:ASP257 5.0 7.8 1.0
ND2 B:ASN386 5.0 7.3 1.0

Calcium binding site 6 out of 11 in 3jq1

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Calcium binding site 6 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca3

b:14.9
occ:0.90
O B:HOH869 2.4 14.7 1.0
O2 B:EDO26 2.4 17.4 1.0
O B:HOH881 2.4 15.1 1.0
O1 B:EDO26 2.5 17.7 1.0
OE1 B:GLU466 2.5 14.5 1.0
O B:HOH828 2.6 13.7 1.0
C1 B:EDO26 3.3 14.6 1.0
C2 B:EDO26 3.4 16.1 1.0
CD B:GLU466 3.5 8.9 1.0
OE2 B:GLU466 3.9 10.9 1.0
O B:HOH806 4.4 13.2 1.0
O B:HOH920 4.4 26.7 1.0
O B:HOH696 4.6 10.8 1.0
O B:HOH720 4.7 11.2 1.0
CG B:GLU466 4.8 8.6 1.0
CB B:GLU466 4.9 8.2 1.0
O B:HOH1160 4.9 32.8 1.0

Calcium binding site 7 out of 11 in 3jq1

Go back to Calcium Binding Sites List in 3jq1
Calcium binding site 7 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca4

b:16.1
occ:0.80
O B:HOH958 2.3 29.1 1.0
OE1 B:GLN211 2.3 14.0 1.0
O B:HOH590 2.3 20.7 1.0
O B:HOH1236 2.4 35.2 1.0
O B:LEU200 2.4 9.0 1.0
O B:HOH694 2.4 23.2 1.0
O B:HOH983 2.5 16.9 1.0
CD B:GLN211 3.5 11.5 1.0
C B:LEU200 3.6 9.0 1.0
CA B:PRO201 4.1 10.3 1.0
N B:PRO201 4.3 10.0 1.0
NE2 B:GLN211 4.3 10.9 1.0
O B:HOH1040 4.3 17.5 1.0
CB B:GLN211 4.3 9.2 1.0
C B:PRO201 4.4 10.1 1.0
CG B:GLN211 4.5 9.2 1.0
N B:ILE202 4.5 10.1 1.0
O B:HOH1483 4.6 37.2 1.0
N B:LEU200 4.6 9.3 1.0
O B:HOH994 4.6 28.9 1.0
O B:ALA197 4.6 11.5 1.0
O B:HOH1492 4.6 17.0 0.4
O B:HOH1002 4.7 28.4 1.0
CA B:LEU200 4.7 9.2 1.0
O B:SER198 4.7 11.9 1.0
C B:LEU199 4.8 9.6 1.0
O B:HOH1492 4.9 21.6 0.6

Calcium binding site 8 out of 11 in 3jq1

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Calcium binding site 8 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca8

b:18.5
occ:0.70
O B:HOH1140 2.1 32.7 1.0
O B:HOH940 2.4 28.4 1.0
O B:HOH777 2.4 25.7 1.0
O B:HOH1133 2.4 32.3 1.0
O B:HOH803 2.5 25.5 1.0
O B:HOH653 2.5 10.3 1.0
O B:HOH718 2.6 23.8 1.0
OG B:SER102 2.6 6.3 0.5
CB B:SER102 3.7 7.9 0.5
CB B:SER102 3.8 9.0 0.5
OG B:SER102 4.2 11.9 0.5
O B:HOH1280 4.4 35.0 1.0
OD2 B:ASP88 4.4 15.4 1.0
N B:SER102 4.5 8.4 1.0
O B:THR100 4.5 8.2 1.0
O B:HOH658 4.5 22.0 1.0
O B:HOH761 4.6 12.3 1.0
OD1 B:ASP88 4.7 12.1 1.0
CA B:SER102 4.7 8.9 0.5
CA B:SER102 4.7 8.2 0.5
O B:HOH1317 4.8 36.3 1.0

Calcium binding site 9 out of 11 in 3jq1

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Calcium binding site 9 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca9

b:17.1
occ:0.70
O B:HOH824 2.3 26.3 1.0
O B:HOH804 2.3 13.4 1.0
O B:HOH1071 2.3 18.9 1.0
O B:HOH1045 2.4 18.1 1.0
O B:HOH550 2.4 20.1 1.0
O B:HOH849 2.4 26.7 1.0
O B:HOH926 2.5 27.7 1.0
O B:HOH950 4.3 27.4 1.0
OE1 B:GLN313 4.3 9.2 1.0
O B:LYS361 4.4 7.5 1.0
CE2 B:TYR363 4.4 5.9 1.0
O B:HOH544 4.6 19.4 1.0
O B:HOH692 4.7 10.8 1.0
O B:HOH1239 4.7 34.3 1.0
O B:HOH792 4.8 12.9 1.0
CD B:LYS361 4.9 8.8 1.0
O B:HOH894 4.9 26.8 1.0

Calcium binding site 10 out of 11 in 3jq1

Go back to Calcium Binding Sites List in 3jq1
Calcium binding site 10 out of 11 in the Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Crystal Structure of Susd Superfamily Protein (YP_001297730.1) From Bacteroides Vulgatus Atcc 8482 at 1.55 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca10

b:21.5
occ:0.60
O B:HOH1377 2.2 40.6 1.0
O B:GLY327 2.3 14.2 1.0
O B:HOH1108 2.5 31.8 1.0
O B:HOH1164 2.6 33.2 1.0
C B:GLY327 3.4 13.3 1.0
CA B:GLY327 4.2 13.2 1.0
O B:HOH1083 4.3 31.2 1.0
N B:ASN328 4.3 11.9 1.0
CA B:ASN328 4.5 11.4 1.0
OD1 B:ASN328 4.5 17.1 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 04:16:20 2020

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