Calcium in PDB 3jtc: Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Enzymatic activity of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
All present enzymatic activity of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins:
3.4.21.69;
Protein crystallography data
The structure of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins, PDB code: 3jtc
was solved by
S.P.Bajaj,
K.Vadivel,
S.Agah,
D.Cascio,
S.Krishnaswamy,
C.Esmon,
K.Padmanabhan,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
23.22 /
1.60
|
Space group
|
P 1 21 1
|
Cell size a, b, c (Å), α, β, γ (°)
|
59.220,
62.360,
71.030,
90.00,
101.81,
90.00
|
R / Rfree (%)
|
19.1 /
22.6
|
Other elements in 3jtc:
The structure of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins also contains other interesting chemical elements:
Calcium Binding Sites:
The binding sites of Calcium atom in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
(pdb code 3jtc). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 10 binding sites of Calcium where determined in the
Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins, PDB code: 3jtc:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 1 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca35
b:14.4
occ:1.00
|
OE12
|
C:CGU7
|
2.3
|
13.4
|
1.0
|
O
|
C:HOH47
|
2.3
|
14.3
|
1.0
|
OE2
|
A:GLU86
|
2.3
|
17.0
|
1.0
|
OE11
|
C:CGU26
|
2.4
|
15.0
|
1.0
|
OE22
|
C:CGU7
|
2.4
|
17.2
|
1.0
|
OE22
|
C:CGU29
|
2.5
|
15.1
|
1.0
|
OE21
|
C:CGU29
|
2.6
|
14.0
|
1.0
|
CD2
|
C:CGU29
|
2.9
|
15.0
|
1.0
|
CD1
|
C:CGU7
|
3.2
|
14.0
|
1.0
|
CD
|
A:GLU86
|
3.2
|
16.1
|
1.0
|
CD1
|
C:CGU26
|
3.3
|
15.3
|
1.0
|
CD2
|
C:CGU7
|
3.5
|
13.9
|
1.0
|
OE12
|
C:CGU26
|
3.5
|
12.6
|
1.0
|
OE1
|
A:GLU86
|
3.6
|
14.8
|
1.0
|
CG
|
C:CGU7
|
3.8
|
12.7
|
1.0
|
CA
|
C:CA36
|
3.9
|
15.7
|
1.0
|
O
|
C:HOH70
|
4.0
|
21.1
|
1.0
|
O
|
A:HOH608
|
4.0
|
21.1
|
1.0
|
MG
|
C:MG34
|
4.0
|
15.8
|
1.0
|
OE11
|
C:CGU7
|
4.2
|
15.1
|
1.0
|
O
|
C:HOH75
|
4.2
|
21.0
|
1.0
|
OE22
|
C:CGU25
|
4.3
|
16.5
|
1.0
|
CB
|
C:CGU7
|
4.3
|
12.9
|
1.0
|
CG
|
C:CGU29
|
4.3
|
15.4
|
1.0
|
CG
|
A:GLU86
|
4.4
|
14.9
|
1.0
|
OE21
|
C:CGU7
|
4.5
|
16.7
|
1.0
|
O
|
C:HOH56
|
4.6
|
18.4
|
1.0
|
CG
|
C:CGU26
|
4.7
|
14.7
|
1.0
|
ND2
|
C:ASN2
|
4.7
|
17.3
|
1.0
|
OE11
|
C:CGU29
|
4.8
|
17.2
|
1.0
|
OD1
|
C:ASN2
|
4.8
|
14.9
|
1.0
|
CD2
|
C:CGU25
|
4.8
|
17.3
|
1.0
|
CD1
|
C:CGU29
|
4.9
|
16.5
|
1.0
|
CG
|
C:CGU25
|
4.9
|
15.9
|
1.0
|
|
Calcium binding site 2 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 2 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca36
b:15.7
occ:1.00
|
O
|
C:HOH74
|
2.3
|
14.3
|
1.0
|
OE12
|
C:CGU26
|
2.4
|
12.6
|
1.0
|
O
|
C:HOH56
|
2.4
|
18.4
|
1.0
|
OE12
|
C:CGU7
|
2.5
|
13.4
|
1.0
|
O
|
C:HOH57
|
2.5
|
17.8
|
1.0
|
OE21
|
C:CGU29
|
2.6
|
14.0
|
1.0
|
OE11
|
C:CGU16
|
2.6
|
14.7
|
1.0
|
OE11
|
C:CGU7
|
2.7
|
15.1
|
1.0
|
CD1
|
C:CGU7
|
2.9
|
14.0
|
1.0
|
CD1
|
C:CGU16
|
3.5
|
14.6
|
1.0
|
OE12
|
C:CGU16
|
3.5
|
15.3
|
1.0
|
CD1
|
C:CGU26
|
3.7
|
15.3
|
1.0
|
CA
|
C:CA37
|
3.7
|
15.1
|
1.0
|
CD2
|
C:CGU29
|
3.7
|
15.0
|
1.0
|
CA
|
C:CA35
|
3.9
|
14.4
|
1.0
|
OE11
|
C:CGU26
|
4.0
|
15.0
|
1.0
|
CB
|
C:CGU29
|
4.2
|
15.4
|
1.0
|
O
|
A:HOH608
|
4.4
|
21.1
|
1.0
|
CB
|
C:SER11
|
4.4
|
18.0
|
1.0
|
CG
|
C:CGU7
|
4.4
|
12.7
|
1.0
|
OE11
|
C:CGU6
|
4.5
|
20.0
|
1.0
|
CA
|
C:SER11
|
4.6
|
16.0
|
1.0
|
CG
|
C:CGU29
|
4.6
|
15.4
|
1.0
|
CA
|
C:CGU26
|
4.7
|
14.8
|
1.0
|
CG
|
C:CGU26
|
4.7
|
14.7
|
1.0
|
O
|
C:CGU26
|
4.7
|
15.3
|
1.0
|
OE22
|
C:CGU29
|
4.7
|
15.1
|
1.0
|
CB
|
C:CGU26
|
4.8
|
14.0
|
1.0
|
CG
|
C:CGU16
|
4.9
|
18.6
|
1.0
|
OD1
|
C:ASN2
|
4.9
|
14.9
|
1.0
|
OE22
|
C:CGU26
|
4.9
|
17.0
|
1.0
|
CB
|
C:CGU7
|
5.0
|
12.9
|
1.0
|
|
Calcium binding site 3 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 3 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca37
b:15.1
occ:1.00
|
OD1
|
C:ASN2
|
2.3
|
14.9
|
1.0
|
OE11
|
C:CGU7
|
2.3
|
15.1
|
1.0
|
OE21
|
C:CGU16
|
2.4
|
16.4
|
1.0
|
OE22
|
C:CGU26
|
2.4
|
17.0
|
1.0
|
OE11
|
C:CGU16
|
2.5
|
14.7
|
1.0
|
OE12
|
C:CGU6
|
2.6
|
15.6
|
1.0
|
OE12
|
C:CGU26
|
2.6
|
12.6
|
1.0
|
O
|
C:ALA1
|
3.0
|
16.9
|
1.0
|
CD2
|
C:CGU16
|
3.2
|
16.1
|
1.0
|
CD1
|
C:CGU7
|
3.3
|
14.0
|
1.0
|
OE11
|
C:CGU6
|
3.3
|
20.0
|
1.0
|
CD1
|
C:CGU6
|
3.3
|
17.9
|
1.0
|
CD1
|
C:CGU26
|
3.4
|
15.3
|
1.0
|
CD1
|
C:CGU16
|
3.5
|
14.6
|
1.0
|
CG
|
C:ASN2
|
3.5
|
16.7
|
1.0
|
CD2
|
C:CGU26
|
3.6
|
19.2
|
1.0
|
CA
|
C:CA36
|
3.7
|
15.7
|
1.0
|
C
|
C:ALA1
|
3.7
|
16.2
|
1.0
|
CA
|
C:CA38
|
3.8
|
18.1
|
1.0
|
CG
|
C:CGU16
|
3.9
|
18.6
|
1.0
|
OE22
|
C:CGU16
|
4.0
|
17.5
|
1.0
|
CG
|
C:CGU26
|
4.1
|
14.7
|
1.0
|
CG
|
C:CGU7
|
4.1
|
12.7
|
1.0
|
OE12
|
C:CGU7
|
4.2
|
13.4
|
1.0
|
N
|
C:ALA1
|
4.2
|
16.5
|
1.0
|
CA
|
C:ASN2
|
4.2
|
17.4
|
1.0
|
OE11
|
C:CGU26
|
4.3
|
15.0
|
1.0
|
N
|
C:ASN2
|
4.3
|
17.5
|
1.0
|
O
|
C:HOH57
|
4.3
|
17.8
|
1.0
|
CB
|
C:ASN2
|
4.4
|
16.2
|
1.0
|
ND2
|
C:ASN2
|
4.4
|
17.3
|
1.0
|
CB
|
C:CGU16
|
4.5
|
14.3
|
1.0
|
OE21
|
C:CGU26
|
4.5
|
17.0
|
1.0
|
CA
|
C:ALA1
|
4.6
|
16.8
|
1.0
|
OE12
|
C:CGU16
|
4.6
|
15.3
|
1.0
|
CB
|
C:CGU26
|
4.7
|
14.0
|
1.0
|
CG
|
C:CGU6
|
4.8
|
15.6
|
1.0
|
CD2
|
C:CGU7
|
4.8
|
13.9
|
1.0
|
OE21
|
C:CGU20
|
4.9
|
18.2
|
1.0
|
|
Calcium binding site 4 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 4 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca38
b:18.1
occ:1.00
|
OE22
|
C:CGU6
|
2.3
|
17.8
|
1.0
|
OE21
|
C:CGU20
|
2.4
|
18.2
|
1.0
|
O
|
C:ALA1
|
2.4
|
16.9
|
1.0
|
OE21
|
C:CGU16
|
2.5
|
16.4
|
1.0
|
O
|
C:HOH59
|
2.5
|
20.8
|
1.0
|
OE12
|
C:CGU6
|
2.5
|
15.6
|
1.0
|
OE22
|
C:CGU16
|
2.5
|
17.5
|
1.0
|
OE22
|
C:CGU20
|
2.6
|
19.4
|
1.0
|
CD2
|
C:CGU20
|
2.8
|
22.6
|
1.0
|
CD2
|
C:CGU16
|
2.9
|
16.1
|
1.0
|
CD1
|
C:CGU6
|
3.2
|
17.9
|
1.0
|
CD2
|
C:CGU6
|
3.4
|
18.8
|
1.0
|
C
|
C:ALA1
|
3.5
|
16.2
|
1.0
|
CA
|
C:CA37
|
3.8
|
15.1
|
1.0
|
CG
|
C:CGU6
|
3.8
|
15.6
|
1.0
|
OE11
|
C:CGU6
|
3.8
|
20.0
|
1.0
|
N
|
C:ALA1
|
4.1
|
16.5
|
1.0
|
O
|
C:HOH80
|
4.1
|
26.6
|
1.0
|
CA
|
C:ALA1
|
4.3
|
16.8
|
1.0
|
N
|
C:ASN2
|
4.4
|
17.5
|
1.0
|
CG
|
C:CGU20
|
4.4
|
19.8
|
1.0
|
CA
|
C:ASN2
|
4.4
|
17.4
|
1.0
|
CG
|
C:CGU16
|
4.4
|
18.6
|
1.0
|
OE21
|
C:CGU6
|
4.5
|
18.0
|
1.0
|
CA
|
C:CA39
|
4.5
|
33.3
|
1.0
|
O
|
C:HOH63
|
4.6
|
37.9
|
1.0
|
O
|
C:ARG15
|
4.6
|
18.5
|
1.0
|
NE
|
C:ARG15
|
4.7
|
21.3
|
1.0
|
CB
|
C:CGU6
|
4.7
|
15.6
|
1.0
|
CB
|
C:ALA1
|
4.7
|
18.0
|
1.0
|
CA
|
C:CGU16
|
4.8
|
17.7
|
1.0
|
OE22
|
C:CGU26
|
4.9
|
17.0
|
1.0
|
N
|
C:SER3
|
4.9
|
17.4
|
1.0
|
OE11
|
C:CGU16
|
4.9
|
14.7
|
1.0
|
OG
|
C:SER3
|
4.9
|
20.9
|
1.0
|
CG
|
C:ARG15
|
5.0
|
25.1
|
1.0
|
OD1
|
C:ASN2
|
5.0
|
14.9
|
1.0
|
CB
|
C:CGU16
|
5.0
|
14.3
|
1.0
|
|
Calcium binding site 5 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 5 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca39
b:33.3
occ:1.00
|
O
|
C:HOH66
|
2.0
|
33.4
|
1.0
|
O
|
C:HOH80
|
2.2
|
26.6
|
1.0
|
O
|
C:HOH79
|
2.2
|
24.9
|
1.0
|
OE22
|
C:CGU20
|
2.2
|
19.4
|
1.0
|
O
|
C:HOH63
|
2.3
|
37.9
|
1.0
|
OE11
|
C:CGU20
|
2.5
|
29.9
|
1.0
|
CD2
|
C:CGU20
|
3.2
|
22.6
|
1.0
|
CD1
|
C:CGU20
|
3.3
|
23.1
|
1.0
|
CG
|
C:CGU20
|
3.5
|
19.8
|
1.0
|
OE22
|
C:CGU6
|
4.3
|
17.8
|
1.0
|
OE21
|
C:CGU20
|
4.3
|
18.2
|
1.0
|
O
|
C:ARG15
|
4.3
|
18.5
|
1.0
|
O
|
C:HOH59
|
4.4
|
20.8
|
1.0
|
CA
|
C:CA38
|
4.5
|
18.1
|
1.0
|
OE12
|
C:CGU20
|
4.5
|
25.3
|
1.0
|
OE12
|
C:CGU19
|
4.5
|
27.6
|
1.0
|
CG
|
C:ARG15
|
4.5
|
25.1
|
1.0
|
|
Calcium binding site 6 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 6 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca35
b:19.5
occ:1.00
|
OE2
|
B:GLU86
|
2.3
|
22.0
|
1.0
|
O
|
D:HOH54
|
2.3
|
22.5
|
1.0
|
OE22
|
D:CGU7
|
2.3
|
19.8
|
1.0
|
OE11
|
D:CGU26
|
2.4
|
19.9
|
1.0
|
OE12
|
D:CGU7
|
2.4
|
19.9
|
1.0
|
OE22
|
D:CGU29
|
2.5
|
17.3
|
1.0
|
OE21
|
D:CGU29
|
2.5
|
21.9
|
1.0
|
CD2
|
D:CGU29
|
2.8
|
14.1
|
1.0
|
CD
|
B:GLU86
|
3.2
|
20.6
|
1.0
|
CD1
|
D:CGU26
|
3.3
|
17.6
|
1.0
|
CD1
|
D:CGU7
|
3.3
|
20.0
|
1.0
|
CD2
|
D:CGU7
|
3.4
|
20.5
|
1.0
|
OE12
|
D:CGU26
|
3.4
|
18.8
|
1.0
|
OE1
|
B:GLU86
|
3.6
|
20.3
|
1.0
|
CG
|
D:CGU7
|
3.8
|
18.7
|
1.0
|
CA
|
D:CA36
|
3.8
|
19.3
|
1.0
|
O
|
B:HOH666
|
4.1
|
29.7
|
1.0
|
MG
|
D:MG34
|
4.1
|
21.9
|
1.0
|
O
|
D:HOH49
|
4.1
|
25.9
|
1.0
|
OE11
|
D:CGU7
|
4.2
|
20.7
|
1.0
|
O
|
D:HOH76
|
4.2
|
29.6
|
1.0
|
CB
|
D:CGU7
|
4.3
|
21.2
|
1.0
|
CG
|
D:CGU29
|
4.3
|
19.9
|
1.0
|
OE22
|
D:CGU25
|
4.3
|
21.2
|
1.0
|
CG
|
B:GLU86
|
4.4
|
21.4
|
1.0
|
OE21
|
D:CGU7
|
4.4
|
22.6
|
1.0
|
O
|
D:HOH56
|
4.6
|
20.0
|
1.0
|
ND2
|
D:ASN2
|
4.7
|
23.0
|
1.0
|
CG
|
D:CGU26
|
4.7
|
17.1
|
1.0
|
OD1
|
D:ASN2
|
4.8
|
19.0
|
1.0
|
CD2
|
D:CGU25
|
4.9
|
19.6
|
1.0
|
OE11
|
D:CGU29
|
4.9
|
20.1
|
1.0
|
CG
|
D:CGU25
|
4.9
|
19.5
|
1.0
|
CD1
|
D:CGU29
|
4.9
|
20.7
|
1.0
|
|
Calcium binding site 7 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 7 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca36
b:19.3
occ:1.00
|
OE12
|
D:CGU26
|
2.4
|
18.8
|
1.0
|
O
|
D:HOH57
|
2.4
|
19.5
|
1.0
|
OE12
|
D:CGU7
|
2.4
|
19.9
|
1.0
|
OE21
|
D:CGU29
|
2.4
|
21.9
|
1.0
|
OE11
|
D:CGU16
|
2.5
|
21.1
|
1.0
|
O
|
D:HOH56
|
2.5
|
20.0
|
1.0
|
O
|
D:HOH60
|
2.5
|
19.9
|
1.0
|
OE11
|
D:CGU7
|
2.6
|
20.7
|
1.0
|
CD1
|
D:CGU7
|
2.8
|
20.0
|
1.0
|
CD1
|
D:CGU16
|
3.5
|
20.7
|
1.0
|
OE12
|
D:CGU16
|
3.6
|
20.0
|
1.0
|
CD2
|
D:CGU29
|
3.6
|
14.1
|
1.0
|
CD1
|
D:CGU26
|
3.6
|
17.6
|
1.0
|
CA
|
D:CA37
|
3.7
|
18.7
|
1.0
|
CA
|
D:CA35
|
3.8
|
19.5
|
1.0
|
OE11
|
D:CGU26
|
4.0
|
19.9
|
1.0
|
CB
|
D:CGU29
|
4.3
|
19.3
|
1.0
|
CG
|
D:CGU7
|
4.4
|
18.7
|
1.0
|
OE11
|
D:CGU6
|
4.5
|
24.9
|
1.0
|
CB
|
D:SER11
|
4.5
|
22.9
|
1.0
|
CG
|
D:CGU29
|
4.5
|
19.9
|
1.0
|
O
|
B:HOH666
|
4.6
|
29.7
|
1.0
|
OE22
|
D:CGU29
|
4.6
|
17.3
|
1.0
|
CA
|
D:SER11
|
4.7
|
21.2
|
1.0
|
CA
|
D:CGU26
|
4.7
|
17.3
|
1.0
|
CB
|
D:CGU26
|
4.7
|
18.0
|
1.0
|
O
|
D:CGU26
|
4.7
|
21.4
|
1.0
|
CG
|
D:CGU26
|
4.7
|
17.1
|
1.0
|
CG
|
D:CGU16
|
4.9
|
20.1
|
1.0
|
CB
|
D:CGU7
|
4.9
|
21.2
|
1.0
|
OD1
|
D:ASN2
|
4.9
|
19.0
|
1.0
|
OE2
|
B:GLU86
|
4.9
|
22.0
|
1.0
|
OE22
|
D:CGU26
|
5.0
|
18.8
|
1.0
|
|
Calcium binding site 8 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 8 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca37
b:18.7
occ:1.00
|
OE11
|
D:CGU7
|
2.2
|
20.7
|
1.0
|
OD1
|
D:ASN2
|
2.3
|
19.0
|
1.0
|
OE21
|
D:CGU16
|
2.3
|
19.2
|
1.0
|
OE22
|
D:CGU26
|
2.4
|
18.8
|
1.0
|
OE11
|
D:CGU16
|
2.5
|
21.1
|
1.0
|
OE12
|
D:CGU6
|
2.5
|
20.9
|
1.0
|
OE12
|
D:CGU26
|
2.7
|
18.8
|
1.0
|
O
|
D:ALA1
|
2.8
|
21.2
|
1.0
|
CD1
|
D:CGU7
|
3.2
|
20.0
|
1.0
|
CD2
|
D:CGU16
|
3.2
|
18.4
|
1.0
|
CD1
|
D:CGU6
|
3.3
|
25.3
|
1.0
|
CD1
|
D:CGU26
|
3.4
|
17.6
|
1.0
|
CD1
|
D:CGU16
|
3.4
|
20.7
|
1.0
|
OE11
|
D:CGU6
|
3.4
|
24.9
|
1.0
|
CG
|
D:ASN2
|
3.5
|
22.9
|
1.0
|
CD2
|
D:CGU26
|
3.6
|
19.0
|
1.0
|
C
|
D:ALA1
|
3.6
|
19.5
|
1.0
|
CA
|
D:CA36
|
3.7
|
19.3
|
1.0
|
CA
|
D:CA38
|
3.7
|
20.7
|
1.0
|
CG
|
D:CGU16
|
3.9
|
20.1
|
1.0
|
CG
|
D:CGU26
|
4.0
|
17.1
|
1.0
|
OE12
|
D:CGU7
|
4.1
|
19.9
|
1.0
|
CG
|
D:CGU7
|
4.1
|
18.7
|
1.0
|
OE22
|
D:CGU16
|
4.2
|
20.8
|
1.0
|
CA
|
D:ASN2
|
4.2
|
20.3
|
1.0
|
N
|
D:ALA1
|
4.2
|
19.4
|
1.0
|
N
|
D:ASN2
|
4.3
|
19.9
|
1.0
|
OE11
|
D:CGU26
|
4.3
|
19.9
|
1.0
|
ND2
|
D:ASN2
|
4.3
|
23.0
|
1.0
|
O
|
D:HOH60
|
4.4
|
19.9
|
1.0
|
CB
|
D:ASN2
|
4.4
|
19.8
|
1.0
|
CA
|
D:ALA1
|
4.5
|
18.3
|
1.0
|
CB
|
D:CGU16
|
4.6
|
19.1
|
1.0
|
OE21
|
D:CGU26
|
4.6
|
20.6
|
1.0
|
OE12
|
D:CGU16
|
4.6
|
20.0
|
1.0
|
CB
|
D:CGU26
|
4.6
|
18.0
|
1.0
|
CG
|
D:CGU6
|
4.8
|
22.7
|
1.0
|
CD2
|
D:CGU7
|
4.8
|
20.5
|
1.0
|
OE21
|
D:CGU20
|
4.8
|
22.9
|
1.0
|
|
Calcium binding site 9 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 9 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca38
b:20.7
occ:1.00
|
O
|
D:ALA1
|
2.3
|
21.2
|
1.0
|
OE22
|
D:CGU6
|
2.4
|
23.2
|
1.0
|
O
|
D:HOH77
|
2.4
|
22.8
|
1.0
|
OE21
|
D:CGU20
|
2.4
|
22.9
|
1.0
|
OE21
|
D:CGU16
|
2.4
|
19.2
|
1.0
|
OE12
|
D:CGU6
|
2.5
|
20.9
|
1.0
|
OE22
|
D:CGU16
|
2.5
|
20.8
|
1.0
|
CD2
|
D:CGU16
|
2.8
|
18.4
|
1.0
|
OE22
|
D:CGU20
|
2.8
|
22.2
|
1.0
|
CD2
|
D:CGU20
|
2.8
|
19.4
|
1.0
|
CD1
|
D:CGU6
|
3.2
|
25.3
|
1.0
|
C
|
D:ALA1
|
3.4
|
19.5
|
1.0
|
CD2
|
D:CGU6
|
3.5
|
27.9
|
1.0
|
CA
|
D:CA37
|
3.7
|
18.7
|
1.0
|
CG
|
D:CGU6
|
3.8
|
22.7
|
1.0
|
OE11
|
D:CGU6
|
3.9
|
24.9
|
1.0
|
O
|
D:HOH75
|
4.0
|
37.3
|
1.0
|
N
|
D:ALA1
|
4.1
|
19.4
|
1.0
|
O
|
D:ARG15
|
4.2
|
25.3
|
1.0
|
CG
|
D:CGU16
|
4.3
|
20.1
|
1.0
|
CA
|
D:ALA1
|
4.3
|
18.3
|
1.0
|
N
|
D:ASN2
|
4.3
|
19.9
|
1.0
|
CG
|
D:CGU20
|
4.4
|
21.5
|
1.0
|
CA
|
D:ASN2
|
4.4
|
20.3
|
1.0
|
O
|
D:HOH70
|
4.5
|
28.5
|
1.0
|
OE21
|
D:CGU6
|
4.5
|
27.1
|
1.0
|
CA
|
D:CA39
|
4.6
|
34.3
|
1.0
|
CB
|
D:CGU6
|
4.7
|
21.1
|
1.0
|
NE
|
D:ARG15
|
4.7
|
25.1
|
1.0
|
O
|
D:HOH78
|
4.7
|
49.7
|
1.0
|
CA
|
D:CGU16
|
4.8
|
20.7
|
1.0
|
N
|
D:SER3
|
4.8
|
21.5
|
1.0
|
OE22
|
D:CGU26
|
4.8
|
18.8
|
1.0
|
CB
|
D:ALA1
|
4.8
|
21.8
|
1.0
|
OD1
|
D:ASN2
|
4.9
|
19.0
|
1.0
|
OE11
|
D:CGU16
|
4.9
|
21.1
|
1.0
|
CB
|
D:CGU16
|
5.0
|
19.1
|
1.0
|
|
Calcium binding site 10 out
of 10 in 3jtc
Go back to
Calcium Binding Sites List in 3jtc
Calcium binding site 10 out
of 10 in the Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Importance of MG2+ in the CA2+-Dependent Folding of the Gamma- Carboxyglutamic Acid Domains of Vitamin K-Dependent Clotting and Anticlotting Proteins within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca39
b:34.3
occ:1.00
|
O
|
D:HOH69
|
1.8
|
24.2
|
0.5
|
OE22
|
D:CGU20
|
2.1
|
22.2
|
1.0
|
O
|
D:HOH58
|
2.2
|
22.3
|
1.0
|
O
|
D:HOH70
|
2.3
|
28.5
|
1.0
|
OE11
|
D:CGU20
|
2.3
|
28.9
|
1.0
|
O
|
D:HOH75
|
2.4
|
37.3
|
1.0
|
CD1
|
D:CGU20
|
3.2
|
22.3
|
1.0
|
CD2
|
D:CGU20
|
3.2
|
19.4
|
1.0
|
CG
|
D:CGU20
|
3.4
|
21.5
|
1.0
|
O
|
D:ARG15
|
4.1
|
25.3
|
1.0
|
OE22
|
D:CGU6
|
4.3
|
23.2
|
1.0
|
OE21
|
D:CGU20
|
4.3
|
22.9
|
1.0
|
OE12
|
D:CGU20
|
4.4
|
29.1
|
1.0
|
O
|
D:HOH77
|
4.5
|
22.8
|
1.0
|
CG
|
D:ARG15
|
4.5
|
26.5
|
1.0
|
CA
|
D:CA38
|
4.6
|
20.7
|
1.0
|
OE22
|
D:CGU19
|
4.7
|
27.3
|
1.0
|
CB
|
D:CGU20
|
4.9
|
24.4
|
1.0
|
|
Reference:
K.Vadivel,
S.Agah,
A.S.Messer,
D.Cascio,
M.S.Bajaj,
S.Krishnaswamy,
C.T.Esmon,
K.Padmanabhan,
S.P.Bajaj.
Structural and Functional Studies of Gamma-Carboxyglutamic Acid Domains of Factor Viia and Activated Protein C: Role of Magnesium at Physiological Calcium. J.Mol.Biol. V. 425 1961 2013.
ISSN: ISSN 0022-2836
PubMed: 23454357
DOI: 10.1016/J.JMB.2013.02.017
Page generated: Sat Jul 13 11:52:32 2024
|