Atomistry » Calcium » PDB 3iti-3k3w » 3ju7
Atomistry »
  Calcium »
    PDB 3iti-3k3w »
      3ju7 »

Calcium in PDB 3ju7: Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution, PDB code: 3ju7 was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.72 / 2.19
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 82.388, 90.586, 131.699, 90.00, 90.00, 90.00
R / Rfree (%) 17.6 / 22

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution (pdb code 3ju7). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution, PDB code: 3ju7:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 3ju7

Go back to Calcium Binding Sites List in 3ju7
Calcium binding site 1 out of 4 in the Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca377

b:56.0
occ:1.00
O A:HOH530 2.5 26.5 1.0
OD2 A:ASP19 2.6 24.4 1.0
O A:HOH531 2.7 31.5 1.0
CA A:CA379 3.5 49.2 1.0
CG A:ASP19 3.5 22.0 1.0
O A:HOH534 3.7 36.1 1.0
CB A:ASP19 3.7 17.8 1.0
NZ A:LYS247 4.4 42.5 1.0
O A:HOH514 4.4 18.3 1.0
OE2 A:GLU20 4.4 31.7 1.0
O A:HOH532 4.6 19.7 1.0
O A:HOH481 4.6 32.1 1.0
OD1 A:ASP19 4.7 20.2 1.0
OE1 A:GLU20 4.9 28.5 1.0
CD A:GLU20 5.0 27.9 1.0

Calcium binding site 2 out of 4 in 3ju7

Go back to Calcium Binding Sites List in 3ju7
Calcium binding site 2 out of 4 in the Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca378

b:40.8
occ:1.00
O A:HOH533 2.8 29.9 1.0
O A:HOH532 4.4 19.7 1.0
CA A:CA379 4.4 49.2 1.0

Calcium binding site 3 out of 4 in 3ju7

Go back to Calcium Binding Sites List in 3ju7
Calcium binding site 3 out of 4 in the Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca379

b:49.2
occ:1.00
O A:HOH532 2.4 19.7 1.0
OD2 A:ASP19 2.5 24.4 1.0
O A:HOH534 2.8 36.1 1.0
O A:HOH531 3.0 31.5 1.0
O A:HOH533 3.3 29.9 1.0
CA A:CA377 3.5 56.0 1.0
CG A:ASP19 3.5 22.0 1.0
OD1 A:ASP19 3.8 20.2 1.0
O A:HOH514 4.3 18.3 1.0
CA A:CA378 4.4 40.8 1.0
CB A:ASP19 4.8 17.8 1.0
O A:HOH530 4.8 26.5 1.0

Calcium binding site 4 out of 4 in 3ju7

Go back to Calcium Binding Sites List in 3ju7
Calcium binding site 4 out of 4 in the Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Putative Plp-Dependent Aminotransferase (NP_978343.1) From Bacillus Cereus Atcc 10987 at 2.19 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca377

b:48.0
occ:1.00
OD2 B:ASP19 2.3 20.6 1.0
O B:HOH534 2.4 37.1 1.0
O B:HOH520 2.6 28.2 1.0
CG B:ASP19 3.4 20.8 1.0
CB B:ASP19 3.8 19.2 1.0
NZ B:LYS247 4.0 43.3 1.0
O B:HOH449 4.1 26.7 1.0
OE2 B:GLU20 4.4 30.6 1.0
O B:HOH471 4.5 36.4 1.0
OD1 B:ASP19 4.5 23.4 1.0
OE1 B:GLU20 4.7 27.1 1.0
CD B:GLU20 4.9 25.5 1.0
O B:GLU16 5.0 17.5 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 04:16:30 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy