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Calcium in PDB 3jzd: Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution

Protein crystallography data

The structure of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution, PDB code: 3jzd was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.71 / 2.10
Space group P 31 2 1
Cell size a, b, c (Å), α, β, γ (°) 143.841, 143.841, 169.011, 90.00, 90.00, 120.00
R / Rfree (%) 17.4 / 21

Other elements in 3jzd:

The structure of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution (pdb code 3jzd). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution, PDB code: 3jzd:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3jzd

Go back to Calcium Binding Sites List in 3jzd
Calcium binding site 1 out of 3 in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca358

b:27.5
occ:1.00
O A:HOH499 2.4 23.1 1.0
O A:HOH727 2.4 29.1 1.0
OD2 A:ASP325 2.4 15.8 1.0
OD1 A:ASP325 2.5 17.0 1.0
CG A:ASP325 2.8 14.4 1.0
NE A:ARG340 4.2 23.3 0.4
CB A:ASP325 4.3 13.5 1.0
O A:ASP321 4.4 14.4 1.0
O A:HOH371 4.6 34.6 1.0
CD A:ARG340 4.7 23.9 0.4
CZ A:ARG340 4.9 20.3 0.4
NH2 A:ARG340 5.0 12.9 0.4

Calcium binding site 2 out of 3 in 3jzd

Go back to Calcium Binding Sites List in 3jzd
Calcium binding site 2 out of 3 in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca359

b:25.8
occ:0.50
O A:HOH889 2.3 45.7 1.0
O A:HOH501 2.4 20.4 1.0
OE1 A:GLU317 4.2 28.7 1.0
OE2 A:GLU318 4.7 17.7 1.0

Calcium binding site 3 out of 3 in 3jzd

Go back to Calcium Binding Sites List in 3jzd
Calcium binding site 3 out of 3 in the Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Putative Alcohol Dehedrogenase (YP_298327.1) From Ralstonia Eutropha JMP134 at 2.10 A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca359

b:43.9
occ:0.50
O A:HOH890 2.3 36.2 1.0
OE2 A:GLU317 2.7 26.4 1.0
OE1 A:GLU317 2.9 28.7 1.0
O A:HOH889 3.0 45.7 1.0
CD A:GLU317 3.2 22.5 1.0
O A:HOH501 4.5 20.4 1.0
OE2 A:GLU352 4.7 38.3 1.0
CG A:GLU317 4.7 17.5 1.0
NE2 A:GLN348 4.8 17.4 1.0
O A:HOH639 4.8 32.4 1.0

Reference:

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.
Page generated: Sat Dec 12 04:16:33 2020

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