Calcium in PDB 3k71: Structure of Integrin Alphax BETA2 Ectodomain
Protein crystallography data
The structure of Structure of Integrin Alphax BETA2 Ectodomain, PDB code: 3k71
was solved by
C.Xie,
J.Zhu,
X.Chen,
L.Mi,
N.Nishida,
T.A.Springer,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
Resolution Low / High (Å)
|
49.67 /
3.95
|
Space group
|
P 21 21 21
|
Cell size a, b, c (Å), α, β, γ (°)
|
149.664,
165.745,
537.676,
90.00,
90.00,
90.00
|
R / Rfree (%)
|
35 /
37.3
|
Other elements in 3k71:
The structure of Structure of Integrin Alphax BETA2 Ectodomain also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
16;
Binding sites:
The binding sites of Calcium atom in the Structure of Integrin Alphax BETA2 Ectodomain
(pdb code 3k71). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 16 binding sites of Calcium where determined in the
Structure of Integrin Alphax BETA2 Ectodomain, PDB code: 3k71:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 1 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2005
b:0.8
occ:1.00
|
O
|
A:SER453
|
2.6
|
0.9
|
1.0
|
OD1
|
A:ASP447
|
2.8
|
0.0
|
1.0
|
CG
|
A:ASP447
|
2.9
|
0.7
|
1.0
|
CG
|
A:ASP455
|
3.0
|
0.4
|
1.0
|
N
|
A:ASP455
|
3.2
|
0.5
|
1.0
|
CB
|
A:ASP455
|
3.2
|
0.6
|
1.0
|
OD1
|
A:ASP449
|
3.2
|
0.7
|
1.0
|
OD2
|
A:ASP447
|
3.2
|
0.7
|
1.0
|
OD1
|
A:ASP451
|
3.3
|
0.7
|
1.0
|
CA
|
A:ASP447
|
3.3
|
0.2
|
1.0
|
OD1
|
A:ASP455
|
3.3
|
1.0
|
1.0
|
OD2
|
A:ASP455
|
3.4
|
0.3
|
1.0
|
CB
|
A:ASP447
|
3.5
|
0.9
|
1.0
|
C
|
A:SER453
|
3.5
|
0.8
|
1.0
|
CA
|
A:ASP455
|
3.7
|
0.7
|
1.0
|
C
|
A:THR454
|
3.7
|
0.6
|
1.0
|
C
|
A:ASP447
|
3.8
|
0.3
|
1.0
|
N
|
A:VAL448
|
3.8
|
0.0
|
1.0
|
CA
|
A:THR454
|
3.9
|
0.7
|
1.0
|
N
|
A:THR454
|
4.1
|
0.9
|
1.0
|
CG
|
A:ASP449
|
4.2
|
0.8
|
1.0
|
CG
|
A:ASP451
|
4.3
|
0.9
|
1.0
|
O
|
A:VAL446
|
4.3
|
0.1
|
1.0
|
N
|
A:ASP449
|
4.4
|
0.2
|
1.0
|
CG1
|
A:VAL448
|
4.5
|
0.5
|
1.0
|
N
|
A:SER453
|
4.5
|
0.9
|
1.0
|
N
|
A:ASP447
|
4.5
|
0.9
|
1.0
|
OD2
|
A:ASP451
|
4.6
|
0.7
|
1.0
|
OD2
|
A:ASP449
|
4.6
|
0.3
|
1.0
|
O
|
A:ASP447
|
4.6
|
0.3
|
1.0
|
CA
|
A:SER453
|
4.6
|
0.0
|
1.0
|
O
|
A:THR454
|
4.6
|
0.0
|
1.0
|
C
|
A:VAL446
|
4.9
|
0.9
|
1.0
|
CA
|
A:VAL448
|
5.0
|
0.9
|
1.0
|
|
Calcium binding site 2 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 2 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2006
b:0.4
occ:1.00
|
O
|
A:LEU517
|
2.8
|
0.5
|
1.0
|
OD1
|
A:ASP515
|
2.9
|
0.7
|
1.0
|
CG
|
A:ASP511
|
3.1
|
0.9
|
1.0
|
OD2
|
A:ASP511
|
3.2
|
0.2
|
1.0
|
OD1
|
A:ASN513
|
3.2
|
0.9
|
1.0
|
C
|
A:LEU517
|
3.2
|
0.9
|
1.0
|
CA
|
A:ASP511
|
3.3
|
0.9
|
1.0
|
N
|
A:LEU517
|
3.4
|
0.7
|
1.0
|
CB
|
A:ASP511
|
3.5
|
0.6
|
1.0
|
OD1
|
A:ASP511
|
3.5
|
0.2
|
1.0
|
N
|
A:ASP515
|
3.6
|
0.7
|
1.0
|
N
|
A:GLY514
|
3.6
|
0.3
|
1.0
|
N
|
A:VAL512
|
3.6
|
0.5
|
1.0
|
CA
|
A:LEU517
|
3.9
|
0.3
|
1.0
|
C
|
A:ASP511
|
3.9
|
0.2
|
1.0
|
N
|
A:LYS516
|
3.9
|
0.0
|
1.0
|
N
|
A:THR518
|
3.9
|
0.3
|
1.0
|
N
|
A:ASN513
|
4.0
|
0.6
|
1.0
|
CG
|
A:ASP515
|
4.0
|
0.7
|
1.0
|
CG
|
A:ASN513
|
4.1
|
0.9
|
1.0
|
C
|
A:LYS516
|
4.2
|
0.4
|
1.0
|
CA
|
A:GLY514
|
4.2
|
0.2
|
1.0
|
C
|
A:GLY514
|
4.2
|
0.9
|
1.0
|
C
|
A:ASP515
|
4.3
|
0.1
|
1.0
|
CA
|
A:THR518
|
4.3
|
0.8
|
1.0
|
CA
|
A:ASP515
|
4.4
|
0.4
|
1.0
|
C
|
A:ASN513
|
4.4
|
0.0
|
1.0
|
O
|
A:GLY510
|
4.4
|
0.2
|
1.0
|
N
|
A:ASP511
|
4.4
|
0.6
|
1.0
|
OD2
|
A:ASP519
|
4.5
|
0.7
|
1.0
|
CA
|
A:LYS516
|
4.5
|
0.3
|
1.0
|
OD1
|
A:ASP519
|
4.5
|
0.0
|
1.0
|
CB
|
A:LEU517
|
4.6
|
0.5
|
1.0
|
CG
|
A:ASP519
|
4.7
|
0.3
|
1.0
|
CA
|
A:ASN513
|
4.7
|
0.8
|
1.0
|
C
|
A:THR518
|
4.7
|
0.2
|
1.0
|
ND2
|
A:ASN513
|
4.8
|
0.9
|
1.0
|
CA
|
A:VAL512
|
4.8
|
0.3
|
1.0
|
C
|
A:VAL512
|
4.8
|
0.9
|
1.0
|
OD2
|
A:ASP515
|
4.8
|
0.1
|
1.0
|
CB
|
A:ASP515
|
4.8
|
0.4
|
1.0
|
C
|
A:GLY510
|
4.9
|
0.8
|
1.0
|
O
|
A:ASP511
|
5.0
|
0.8
|
1.0
|
|
Calcium binding site 3 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 3 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca2007
b:0.4
occ:1.00
|
O
|
A:LEU580
|
2.7
|
0.3
|
1.0
|
O
|
A:ASP578
|
2.7
|
0.6
|
1.0
|
OD2
|
A:ASP582
|
2.7
|
0.7
|
1.0
|
OD1
|
A:ASP574
|
2.7
|
0.2
|
1.0
|
OD1
|
A:ASP578
|
2.8
|
0.6
|
1.0
|
OD1
|
A:ASP582
|
3.0
|
0.9
|
1.0
|
CG
|
A:ASP582
|
3.1
|
0.2
|
1.0
|
OG1
|
A:THR576
|
3.2
|
0.5
|
1.0
|
CG
|
A:ASP574
|
3.5
|
0.8
|
1.0
|
CA
|
A:ASP574
|
3.6
|
0.5
|
1.0
|
N
|
A:LEU575
|
3.7
|
0.6
|
1.0
|
N
|
A:THR576
|
3.8
|
0.9
|
1.0
|
CB
|
A:ASP574
|
3.8
|
0.1
|
1.0
|
C
|
A:ASP578
|
3.8
|
0.4
|
1.0
|
N
|
A:GLN577
|
3.9
|
0.2
|
1.0
|
C
|
A:LEU580
|
3.9
|
0.8
|
1.0
|
CG
|
A:ASP578
|
3.9
|
0.2
|
1.0
|
C
|
A:ASP574
|
4.0
|
0.5
|
1.0
|
O
|
A:GLY579
|
4.1
|
0.0
|
1.0
|
O
|
A:VAL581
|
4.2
|
0.5
|
1.0
|
CB
|
A:THR576
|
4.2
|
0.2
|
1.0
|
C
|
A:VAL581
|
4.2
|
1.0
|
1.0
|
CB
|
A:ASP582
|
4.3
|
0.9
|
1.0
|
N
|
A:ASP578
|
4.3
|
0.1
|
1.0
|
C
|
A:GLY579
|
4.3
|
0.5
|
1.0
|
CA
|
A:THR576
|
4.4
|
1.0
|
1.0
|
C
|
A:THR576
|
4.5
|
0.7
|
1.0
|
N
|
A:ASP582
|
4.5
|
0.4
|
1.0
|
N
|
A:LEU580
|
4.5
|
0.5
|
1.0
|
CA
|
A:ASP578
|
4.6
|
1.0
|
1.0
|
CG2
|
A:THR576
|
4.6
|
0.3
|
1.0
|
OD2
|
A:ASP578
|
4.6
|
0.2
|
1.0
|
OD2
|
A:ASP574
|
4.6
|
0.0
|
1.0
|
CA
|
A:GLN577
|
4.6
|
0.2
|
1.0
|
CA
|
A:VAL581
|
4.7
|
0.9
|
1.0
|
C
|
A:LEU575
|
4.7
|
0.4
|
1.0
|
N
|
A:VAL581
|
4.7
|
0.8
|
1.0
|
CA
|
A:LEU575
|
4.8
|
0.9
|
1.0
|
C
|
A:GLN577
|
4.8
|
0.6
|
1.0
|
N
|
A:GLY579
|
4.8
|
0.5
|
1.0
|
CA
|
A:LEU580
|
4.8
|
0.3
|
1.0
|
CB
|
A:ASP578
|
4.8
|
0.7
|
1.0
|
CA
|
A:ASP582
|
4.9
|
0.2
|
1.0
|
N
|
A:ASP574
|
4.9
|
0.6
|
1.0
|
O
|
A:GLN573
|
4.9
|
0.3
|
1.0
|
O
|
A:ASP574
|
5.0
|
0.7
|
1.0
|
|
Calcium binding site 4 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 4 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca2002
b:0.8
occ:1.01
|
OD1
|
B:ASP120
|
2.2
|
0.8
|
1.0
|
OD1
|
B:ASP119
|
2.3
|
0.3
|
1.0
|
OE2
|
B:GLU325
|
2.3
|
0.5
|
1.0
|
O
|
B:SER116
|
2.6
|
0.7
|
1.0
|
O
|
B:GLU325
|
2.6
|
0.6
|
1.0
|
CG
|
B:ASP120
|
2.8
|
0.3
|
1.0
|
CD
|
B:GLU325
|
3.2
|
0.8
|
1.0
|
OD2
|
B:ASP120
|
3.2
|
0.0
|
1.0
|
CG
|
B:ASP119
|
3.4
|
0.4
|
1.0
|
CG
|
B:GLU325
|
3.4
|
0.1
|
1.0
|
C
|
B:SER116
|
3.7
|
0.8
|
1.0
|
C
|
B:GLU325
|
3.8
|
0.8
|
1.0
|
OD2
|
B:ASP119
|
3.8
|
0.7
|
1.0
|
N
|
B:ASP120
|
3.9
|
0.4
|
1.0
|
CB
|
B:ASP120
|
3.9
|
0.6
|
1.0
|
CA
|
B:MET117
|
4.0
|
0.1
|
1.0
|
OD2
|
B:ASP242
|
4.2
|
0.2
|
1.0
|
OE1
|
B:GLU325
|
4.3
|
0.3
|
1.0
|
N
|
B:MET117
|
4.3
|
0.8
|
1.0
|
N
|
B:LEU118
|
4.4
|
0.2
|
1.0
|
N
|
B:ASP119
|
4.4
|
0.3
|
1.0
|
CA
|
B:ASP120
|
4.5
|
0.4
|
1.0
|
C
|
B:MET117
|
4.5
|
0.1
|
1.0
|
CB
|
B:GLU325
|
4.5
|
0.6
|
1.0
|
C
|
B:ASP119
|
4.6
|
0.9
|
1.0
|
CA
|
B:GLU325
|
4.6
|
0.4
|
1.0
|
CB
|
B:ASP119
|
4.7
|
0.5
|
1.0
|
SD
|
B:MET117
|
4.7
|
0.9
|
1.0
|
CA
|
B:ASP119
|
4.8
|
0.7
|
1.0
|
N
|
B:ASP326
|
4.8
|
0.9
|
1.0
|
CA
|
B:SER116
|
5.0
|
0.2
|
1.0
|
CA
|
B:ASP326
|
5.0
|
0.3
|
1.0
|
|
Calcium binding site 5 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 5 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca2005
b:0.6
occ:1.00
|
O
|
C:SER453
|
2.6
|
0.4
|
1.0
|
OD1
|
C:ASP447
|
2.8
|
0.3
|
1.0
|
CG
|
C:ASP447
|
2.9
|
0.3
|
1.0
|
CG
|
C:ASP455
|
3.0
|
0.8
|
1.0
|
N
|
C:ASP455
|
3.1
|
0.4
|
1.0
|
CB
|
C:ASP455
|
3.2
|
1.0
|
1.0
|
OD1
|
C:ASP449
|
3.2
|
0.7
|
1.0
|
OD2
|
C:ASP447
|
3.2
|
0.2
|
1.0
|
OD1
|
C:ASP451
|
3.3
|
0.3
|
1.0
|
CA
|
C:ASP447
|
3.3
|
0.4
|
1.0
|
OD1
|
C:ASP455
|
3.3
|
0.4
|
1.0
|
OD2
|
C:ASP455
|
3.4
|
1.0
|
1.0
|
CB
|
C:ASP447
|
3.5
|
0.6
|
1.0
|
C
|
C:SER453
|
3.5
|
0.9
|
1.0
|
CA
|
C:ASP455
|
3.7
|
0.9
|
1.0
|
C
|
C:THR454
|
3.7
|
0.1
|
1.0
|
C
|
C:ASP447
|
3.8
|
0.1
|
1.0
|
N
|
C:VAL448
|
3.8
|
0.7
|
1.0
|
CA
|
C:THR454
|
3.9
|
0.4
|
1.0
|
N
|
C:THR454
|
4.1
|
0.2
|
1.0
|
CG
|
C:ASP449
|
4.2
|
0.7
|
1.0
|
CG
|
C:ASP451
|
4.3
|
0.2
|
1.0
|
O
|
C:VAL446
|
4.3
|
0.8
|
1.0
|
N
|
C:ASP449
|
4.4
|
1.0
|
1.0
|
CG1
|
C:VAL448
|
4.5
|
0.8
|
1.0
|
N
|
C:ASP447
|
4.5
|
1.0
|
1.0
|
N
|
C:SER453
|
4.5
|
0.4
|
1.0
|
OD2
|
C:ASP449
|
4.6
|
0.6
|
1.0
|
O
|
C:ASP447
|
4.6
|
0.6
|
1.0
|
OD2
|
C:ASP451
|
4.6
|
0.0
|
1.0
|
CA
|
C:SER453
|
4.6
|
0.9
|
1.0
|
O
|
C:THR454
|
4.6
|
0.5
|
1.0
|
C
|
C:VAL446
|
4.9
|
0.8
|
1.0
|
CA
|
C:VAL448
|
5.0
|
0.7
|
1.0
|
|
Calcium binding site 6 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 6 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca2006
b:0.2
occ:1.00
|
O
|
C:LEU517
|
2.8
|
0.9
|
1.0
|
OD1
|
C:ASP515
|
2.9
|
0.4
|
1.0
|
CG
|
C:ASP511
|
3.1
|
0.7
|
1.0
|
OD2
|
C:ASP511
|
3.2
|
0.3
|
1.0
|
OD1
|
C:ASN513
|
3.2
|
0.6
|
1.0
|
C
|
C:LEU517
|
3.2
|
0.1
|
1.0
|
CA
|
C:ASP511
|
3.3
|
0.3
|
1.0
|
N
|
C:LEU517
|
3.3
|
0.4
|
1.0
|
CB
|
C:ASP511
|
3.5
|
0.9
|
1.0
|
OD1
|
C:ASP511
|
3.5
|
0.7
|
1.0
|
N
|
C:ASP515
|
3.6
|
0.1
|
1.0
|
N
|
C:VAL512
|
3.6
|
0.3
|
1.0
|
N
|
C:GLY514
|
3.6
|
0.8
|
1.0
|
CA
|
C:LEU517
|
3.8
|
0.5
|
1.0
|
N
|
C:LYS516
|
3.9
|
0.0
|
1.0
|
C
|
C:ASP511
|
3.9
|
0.3
|
1.0
|
N
|
C:THR518
|
3.9
|
0.3
|
1.0
|
N
|
C:ASN513
|
4.0
|
0.4
|
1.0
|
CG
|
C:ASP515
|
4.0
|
0.5
|
1.0
|
CG
|
C:ASN513
|
4.1
|
0.4
|
1.0
|
C
|
C:LYS516
|
4.2
|
0.4
|
1.0
|
CA
|
C:GLY514
|
4.2
|
0.1
|
1.0
|
C
|
C:GLY514
|
4.2
|
0.4
|
1.0
|
CA
|
C:THR518
|
4.3
|
0.0
|
1.0
|
C
|
C:ASP515
|
4.3
|
0.3
|
1.0
|
CA
|
C:ASP515
|
4.4
|
0.7
|
1.0
|
O
|
C:GLY510
|
4.4
|
0.9
|
1.0
|
N
|
C:ASP511
|
4.4
|
0.8
|
1.0
|
C
|
C:ASN513
|
4.4
|
0.7
|
1.0
|
OD2
|
C:ASP519
|
4.5
|
0.8
|
1.0
|
CA
|
C:LYS516
|
4.5
|
0.8
|
1.0
|
OD1
|
C:ASP519
|
4.5
|
0.5
|
1.0
|
CB
|
C:LEU517
|
4.6
|
0.7
|
1.0
|
CG
|
C:ASP519
|
4.6
|
0.2
|
1.0
|
CA
|
C:ASN513
|
4.7
|
0.8
|
1.0
|
C
|
C:THR518
|
4.7
|
0.0
|
1.0
|
ND2
|
C:ASN513
|
4.8
|
0.9
|
1.0
|
CA
|
C:VAL512
|
4.8
|
0.7
|
1.0
|
C
|
C:VAL512
|
4.8
|
0.3
|
1.0
|
OD2
|
C:ASP515
|
4.8
|
0.3
|
1.0
|
CB
|
C:ASP515
|
4.9
|
0.9
|
1.0
|
C
|
C:GLY510
|
4.9
|
0.1
|
1.0
|
O
|
C:ASP511
|
5.0
|
0.1
|
1.0
|
N
|
C:ASP519
|
5.0
|
0.3
|
1.0
|
|
Calcium binding site 7 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 7 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca2007
b:0.4
occ:1.00
|
O
|
C:LEU580
|
2.7
|
0.7
|
1.0
|
O
|
C:ASP578
|
2.7
|
0.9
|
1.0
|
OD2
|
C:ASP582
|
2.7
|
0.1
|
1.0
|
OD1
|
C:ASP574
|
2.7
|
0.2
|
1.0
|
OD1
|
C:ASP578
|
2.8
|
0.3
|
1.0
|
CG
|
C:ASP582
|
3.1
|
0.9
|
1.0
|
OD1
|
C:ASP582
|
3.1
|
0.8
|
1.0
|
OG1
|
C:THR576
|
3.2
|
0.5
|
1.0
|
CG
|
C:ASP574
|
3.5
|
0.3
|
1.0
|
CA
|
C:ASP574
|
3.6
|
0.8
|
1.0
|
N
|
C:LEU575
|
3.7
|
0.0
|
1.0
|
N
|
C:THR576
|
3.8
|
0.1
|
1.0
|
CB
|
C:ASP574
|
3.8
|
0.4
|
1.0
|
C
|
C:ASP578
|
3.8
|
0.9
|
1.0
|
N
|
C:GLN577
|
3.9
|
0.3
|
1.0
|
C
|
C:LEU580
|
3.9
|
0.1
|
1.0
|
CG
|
C:ASP578
|
3.9
|
0.0
|
1.0
|
C
|
C:ASP574
|
4.0
|
0.8
|
1.0
|
O
|
C:GLY579
|
4.1
|
0.1
|
1.0
|
O
|
C:VAL581
|
4.2
|
0.6
|
1.0
|
C
|
C:VAL581
|
4.2
|
0.5
|
1.0
|
CB
|
C:THR576
|
4.2
|
0.1
|
1.0
|
CB
|
C:ASP582
|
4.2
|
0.2
|
1.0
|
N
|
C:ASP578
|
4.3
|
0.8
|
1.0
|
C
|
C:GLY579
|
4.3
|
0.6
|
1.0
|
CA
|
C:THR576
|
4.4
|
0.8
|
1.0
|
C
|
C:THR576
|
4.5
|
0.6
|
1.0
|
N
|
C:ASP582
|
4.5
|
0.1
|
1.0
|
N
|
C:LEU580
|
4.6
|
0.4
|
1.0
|
OD2
|
C:ASP574
|
4.6
|
0.8
|
1.0
|
CG2
|
C:THR576
|
4.6
|
0.2
|
1.0
|
CA
|
C:ASP578
|
4.6
|
1.0
|
1.0
|
OD2
|
C:ASP578
|
4.6
|
0.5
|
1.0
|
CA
|
C:GLN577
|
4.6
|
0.2
|
1.0
|
CA
|
C:VAL581
|
4.6
|
0.3
|
1.0
|
C
|
C:LEU575
|
4.7
|
0.5
|
1.0
|
N
|
C:VAL581
|
4.7
|
0.6
|
1.0
|
CA
|
C:LEU575
|
4.7
|
0.5
|
1.0
|
C
|
C:GLN577
|
4.8
|
0.5
|
1.0
|
N
|
C:GLY579
|
4.8
|
0.8
|
1.0
|
CA
|
C:LEU580
|
4.8
|
1.0
|
1.0
|
CA
|
C:ASP582
|
4.8
|
0.1
|
1.0
|
O
|
C:GLN573
|
4.9
|
0.9
|
1.0
|
N
|
C:ASP574
|
4.9
|
0.4
|
1.0
|
CB
|
C:ASP578
|
4.9
|
0.3
|
1.0
|
O
|
C:ASP574
|
4.9
|
0.1
|
1.0
|
|
Calcium binding site 8 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 8 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca2002
b:0.5
occ:1.01
|
OD1
|
D:ASP120
|
2.2
|
0.6
|
1.0
|
OE2
|
D:GLU325
|
2.3
|
0.8
|
1.0
|
OD1
|
D:ASP119
|
2.3
|
0.1
|
1.0
|
O
|
D:SER116
|
2.6
|
0.6
|
1.0
|
O
|
D:GLU325
|
2.6
|
0.3
|
1.0
|
CG
|
D:ASP120
|
2.8
|
0.1
|
1.0
|
CD
|
D:GLU325
|
3.1
|
0.8
|
1.0
|
OD2
|
D:ASP120
|
3.2
|
0.5
|
1.0
|
CG
|
D:ASP119
|
3.4
|
0.4
|
1.0
|
CG
|
D:GLU325
|
3.4
|
0.4
|
1.0
|
C
|
D:SER116
|
3.7
|
0.1
|
1.0
|
C
|
D:GLU325
|
3.8
|
0.9
|
1.0
|
OD2
|
D:ASP119
|
3.8
|
0.3
|
1.0
|
CB
|
D:ASP120
|
3.9
|
0.8
|
1.0
|
N
|
D:ASP120
|
3.9
|
0.0
|
1.0
|
CA
|
D:MET117
|
4.0
|
0.9
|
1.0
|
OD2
|
D:ASP242
|
4.2
|
0.4
|
1.0
|
OE1
|
D:GLU325
|
4.3
|
0.4
|
1.0
|
N
|
D:MET117
|
4.3
|
0.4
|
1.0
|
N
|
D:LEU118
|
4.4
|
0.4
|
1.0
|
N
|
D:ASP119
|
4.4
|
0.9
|
1.0
|
CA
|
D:ASP120
|
4.5
|
0.7
|
1.0
|
C
|
D:MET117
|
4.5
|
0.7
|
1.0
|
CB
|
D:GLU325
|
4.5
|
0.8
|
1.0
|
C
|
D:ASP119
|
4.6
|
0.8
|
1.0
|
CA
|
D:GLU325
|
4.6
|
0.6
|
1.0
|
CB
|
D:ASP119
|
4.7
|
0.0
|
1.0
|
SD
|
D:MET117
|
4.7
|
0.1
|
1.0
|
CA
|
D:ASP119
|
4.8
|
0.2
|
1.0
|
N
|
D:ASP326
|
4.8
|
0.7
|
1.0
|
CA
|
D:SER116
|
5.0
|
0.6
|
1.0
|
CA
|
D:ASP326
|
5.0
|
0.1
|
1.0
|
|
Calcium binding site 9 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 9 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca2005
b:0.9
occ:1.00
|
O
|
E:SER453
|
2.6
|
0.9
|
1.0
|
OD1
|
E:ASP447
|
2.8
|
0.1
|
1.0
|
CG
|
E:ASP447
|
2.9
|
0.6
|
1.0
|
CG
|
E:ASP455
|
3.0
|
0.5
|
1.0
|
N
|
E:ASP455
|
3.1
|
0.3
|
1.0
|
CB
|
E:ASP455
|
3.2
|
0.1
|
1.0
|
OD1
|
E:ASP449
|
3.2
|
0.8
|
1.0
|
OD2
|
E:ASP447
|
3.2
|
0.5
|
1.0
|
CA
|
E:ASP447
|
3.3
|
0.1
|
1.0
|
OD1
|
E:ASP451
|
3.3
|
0.9
|
1.0
|
OD1
|
E:ASP455
|
3.3
|
0.4
|
1.0
|
OD2
|
E:ASP455
|
3.4
|
0.9
|
1.0
|
CB
|
E:ASP447
|
3.5
|
0.5
|
1.0
|
C
|
E:SER453
|
3.5
|
0.2
|
1.0
|
CA
|
E:ASP455
|
3.7
|
0.4
|
1.0
|
C
|
E:THR454
|
3.7
|
0.7
|
1.0
|
C
|
E:ASP447
|
3.8
|
0.8
|
1.0
|
N
|
E:VAL448
|
3.8
|
0.6
|
1.0
|
CA
|
E:THR454
|
3.9
|
0.8
|
1.0
|
N
|
E:THR454
|
4.1
|
0.5
|
1.0
|
CG
|
E:ASP449
|
4.2
|
0.4
|
1.0
|
O
|
E:VAL446
|
4.3
|
0.8
|
1.0
|
CG
|
E:ASP451
|
4.3
|
0.2
|
1.0
|
N
|
E:ASP449
|
4.4
|
0.7
|
1.0
|
N
|
E:ASP447
|
4.5
|
0.9
|
1.0
|
CG1
|
E:VAL448
|
4.5
|
0.1
|
1.0
|
N
|
E:SER453
|
4.5
|
0.1
|
1.0
|
O
|
E:ASP447
|
4.6
|
0.5
|
1.0
|
O
|
E:THR454
|
4.6
|
0.7
|
1.0
|
OD2
|
E:ASP451
|
4.6
|
0.4
|
1.0
|
CA
|
E:SER453
|
4.6
|
0.9
|
1.0
|
OD2
|
E:ASP449
|
4.6
|
0.6
|
1.0
|
C
|
E:VAL446
|
4.8
|
0.1
|
1.0
|
CA
|
E:VAL448
|
5.0
|
0.9
|
1.0
|
|
Calcium binding site 10 out
of 16 in 3k71
Go back to
Calcium Binding Sites List in 3k71
Calcium binding site 10 out
of 16 in the Structure of Integrin Alphax BETA2 Ectodomain
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of Integrin Alphax BETA2 Ectodomain within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca2006
b:0.4
occ:1.00
|
O
|
E:LEU517
|
2.8
|
0.1
|
1.0
|
OD1
|
E:ASP515
|
2.9
|
0.6
|
1.0
|
CG
|
E:ASP511
|
3.1
|
0.4
|
1.0
|
OD1
|
E:ASN513
|
3.2
|
0.8
|
1.0
|
OD2
|
E:ASP511
|
3.2
|
0.6
|
1.0
|
C
|
E:LEU517
|
3.2
|
0.3
|
1.0
|
CA
|
E:ASP511
|
3.3
|
0.4
|
1.0
|
N
|
E:LEU517
|
3.4
|
0.7
|
1.0
|
OD1
|
E:ASP511
|
3.5
|
1.0
|
1.0
|
CB
|
E:ASP511
|
3.5
|
0.3
|
1.0
|
N
|
E:ASP515
|
3.6
|
0.1
|
1.0
|
N
|
E:VAL512
|
3.6
|
1.0
|
1.0
|
N
|
E:GLY514
|
3.6
|
0.1
|
1.0
|
CA
|
E:LEU517
|
3.9
|
0.6
|
1.0
|
C
|
E:ASP511
|
3.9
|
0.7
|
1.0
|
N
|
E:LYS516
|
3.9
|
0.2
|
1.0
|
N
|
E:THR518
|
3.9
|
0.2
|
1.0
|
N
|
E:ASN513
|
4.0
|
0.8
|
1.0
|
CG
|
E:ASP515
|
4.0
|
0.1
|
1.0
|
CG
|
E:ASN513
|
4.1
|
0.7
|
1.0
|
C
|
E:LYS516
|
4.2
|
0.9
|
1.0
|
CA
|
E:GLY514
|
4.2
|
0.7
|
1.0
|
C
|
E:GLY514
|
4.2
|
0.7
|
1.0
|
CA
|
E:THR518
|
4.3
|
0.1
|
1.0
|
C
|
E:ASP515
|
4.3
|
0.7
|
1.0
|
CA
|
E:ASP515
|
4.4
|
0.4
|
1.0
|
C
|
E:ASN513
|
4.4
|
0.8
|
1.0
|
O
|
E:GLY510
|
4.4
|
0.8
|
1.0
|
OD2
|
E:ASP519
|
4.4
|
0.2
|
1.0
|
N
|
E:ASP511
|
4.5
|
0.5
|
1.0
|
CA
|
E:LYS516
|
4.5
|
0.0
|
1.0
|
OD1
|
E:ASP519
|
4.5
|
0.2
|
1.0
|
CB
|
E:LEU517
|
4.6
|
0.9
|
1.0
|
CG
|
E:ASP519
|
4.6
|
0.7
|
1.0
|
CA
|
E:ASN513
|
4.6
|
0.6
|
1.0
|
C
|
E:THR518
|
4.7
|
0.8
|
1.0
|
ND2
|
E:ASN513
|
4.7
|
0.5
|
1.0
|
CA
|
E:VAL512
|
4.8
|
0.3
|
1.0
|
C
|
E:VAL512
|
4.8
|
0.8
|
1.0
|
OD2
|
E:ASP515
|
4.8
|
0.4
|
1.0
|
CB
|
E:ASP515
|
4.8
|
0.6
|
1.0
|
C
|
E:GLY510
|
4.9
|
0.7
|
1.0
|
O
|
E:ASP511
|
5.0
|
0.5
|
1.0
|
CB
|
E:ASN513
|
5.0
|
0.1
|
1.0
|
N
|
E:ASP519
|
5.0
|
0.6
|
1.0
|
|
Reference:
C.Xie,
J.Zhu,
X.Chen,
L.Mi,
N.Nishida,
T.A.Springer.
Structure of An Integrin with An Alphai Domain, Complement Receptor Type 4. Embo J. V. 29 666 2010.
ISSN: ISSN 0261-4189
PubMed: 20033057
DOI: 10.1038/EMBOJ.2009.367
Page generated: Sat Jul 13 12:05:49 2024
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