Atomistry » Calcium » PDB 3km6-3l4p » 3ktu
Atomistry »
  Calcium »
    PDB 3km6-3l4p »
      3ktu »

Calcium in PDB 3ktu: Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna

Enzymatic activity of Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna

All present enzymatic activity of Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna:
4.2.99.18;

Protein crystallography data

The structure of Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna, PDB code: 3ktu was solved by G.L.Verdine, S.M.Lee, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.21 / 2.30
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 92.400, 92.400, 212.500, 90.00, 90.00, 120.00
R / Rfree (%) 22.5 / 25.7

Other elements in 3ktu:

The structure of Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna also contains other interesting chemical elements:

Fluorine (F) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna (pdb code 3ktu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna, PDB code: 3ktu:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3ktu

Go back to Calcium Binding Sites List in 3ktu
Calcium binding site 1 out of 2 in the Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca2

b:77.5
occ:1.00
O A:CYS241 2.6 50.4 1.0
OP1 C:DC26 2.6 60.2 1.0
O A:LEU243 2.8 52.1 1.0
O A:VAL246 2.8 49.0 1.0
OP2 C:DC26 3.2 61.5 1.0
P C:DC26 3.4 60.9 1.0
C A:CYS241 3.5 51.6 1.0
C A:LEU243 3.8 50.6 1.0
C A:VAL246 3.8 49.2 1.0
O A:ILE242 4.1 52.6 1.0
C A:ILE242 4.1 52.5 1.0
N A:VAL246 4.2 48.7 1.0
CA A:CYS241 4.2 51.4 1.0
N A:LEU243 4.3 50.9 1.0
CA A:VAL246 4.4 47.8 1.0
N A:ILE242 4.5 52.8 1.0
O5' C:DC26 4.5 62.7 1.0
O3' C:DT25 4.6 60.1 1.0
N A:PRO244 4.6 52.6 1.0
CA A:LEU243 4.6 50.1 1.0
CA A:ILE242 4.6 54.0 1.0
N A:GLY245 4.6 52.8 1.0
CB A:VAL246 4.7 47.2 1.0
CA A:PRO244 4.7 52.2 1.0
CB A:CYS241 4.8 52.8 1.0
N A:GLY247 4.8 49.7 1.0

Calcium binding site 2 out of 2 in 3ktu

Go back to Calcium Binding Sites List in 3ktu
Calcium binding site 2 out of 2 in the Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Human 8-Oxoguanine Glycosylase 1 Bound to Fluorninated Oxog-Containing Dna within 5.0Å range:
probe atom residue distance (Å) B Occ
C:Ca1

b:94.5
occ:1.00
OP1 C:DG24 2.9 77.3 1.0
CG2 A:VAL269 3.6 59.4 1.0
C5' C:DG24 3.6 68.4 1.0
C8 C:DG24 3.8 63.0 1.0
P C:DG24 4.1 76.4 1.0
O5' C:DG24 4.1 74.0 1.0
O C:HOH55 4.2 58.8 1.0
N A:VAL269 4.4 57.6 1.0
C2' C:DG24 4.5 62.4 1.0
N7 C:DG24 4.6 62.7 1.0
C4' C:DG24 4.6 65.1 1.0
N9 C:DG24 4.8 62.5 1.0
C3' C:DG24 4.8 61.6 1.0
O4' C:DG24 4.8 64.9 1.0
CB A:VAL269 4.9 58.9 1.0
CA A:ASP268 4.9 57.3 1.0
OP2 C:DG24 5.0 76.0 1.0

Reference:

G.L.Verdine, S.M.Lee. Structural Investigation of HOGG1 Bound to A Fluorinated Oxog Analog To Be Published.
Page generated: Sat Dec 12 04:18:05 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy