Atomistry » Calcium » PDB 3ljz-3lzk » 3lk1
Atomistry »
  Calcium »
    PDB 3ljz-3lzk »
      3lk1 »

Calcium in PDB 3lk1: X-Ray Structure of Bovine SC0322,Ca(2+)-S100B

Protein crystallography data

The structure of X-Ray Structure of Bovine SC0322,Ca(2+)-S100B, PDB code: 3lk1 was solved by T.H.Charpentier, D.J.Weber, P.W.Wilder, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 29.50 / 1.79
Space group C 2 2 21
Cell size a, b, c (Å), α, β, γ (°) 35.194, 88.792, 58.996, 90.00, 90.00, 90.00
R / Rfree (%) 19.6 / 24.2

Other elements in 3lk1:

The structure of X-Ray Structure of Bovine SC0322,Ca(2+)-S100B also contains other interesting chemical elements:

Mercury (Hg) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the X-Ray Structure of Bovine SC0322,Ca(2+)-S100B (pdb code 3lk1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the X-Ray Structure of Bovine SC0322,Ca(2+)-S100B, PDB code: 3lk1:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3lk1

Go back to Calcium Binding Sites List in 3lk1
Calcium binding site 1 out of 2 in the X-Ray Structure of Bovine SC0322,Ca(2+)-S100B


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Structure of Bovine SC0322,Ca(2+)-S100B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca90

b:45.4
occ:1.00
O A:HOH105 2.2 44.9 1.0
OD1 A:ASP61 2.2 50.6 1.0
OD1 A:ASP65 2.3 51.9 1.0
O A:GLU67 2.3 44.9 1.0
OE1 A:GLU72 2.5 43.2 1.0
OD1 A:ASP63 2.5 53.2 1.0
OE2 A:GLU72 2.6 48.9 1.0
CD A:GLU72 2.9 45.1 1.0
CG A:ASP65 3.2 54.8 1.0
CG A:ASP61 3.4 47.6 1.0
CG A:ASP63 3.4 59.7 1.0
C A:GLU67 3.5 44.1 1.0
OD2 A:ASP65 3.5 55.7 1.0
OD2 A:ASP63 3.7 63.5 1.0
N A:GLU67 4.1 47.4 1.0
CB A:ASP61 4.1 44.7 1.0
CA A:ASP61 4.2 45.6 1.0
N A:ASP65 4.2 57.6 1.0
OD2 A:ASP61 4.2 51.0 1.0
CA A:GLU67 4.3 45.8 1.0
N A:ASP69 4.4 42.8 1.0
CG A:GLU72 4.4 42.7 1.0
N A:CYS68 4.4 42.5 1.0
CB A:ASP65 4.4 58.5 1.0
N A:ASP63 4.4 56.8 1.0
OD2 A:ASP69 4.5 52.9 1.0
CA A:CYS68 4.5 40.8 1.0
C A:ASP61 4.5 48.9 1.0
N A:GLY64 4.6 59.9 1.0
CG A:ASP69 4.7 50.1 1.0
CB A:ASP63 4.7 61.8 1.0
CA A:ASP65 4.7 58.3 1.0
N A:SER62 4.8 50.5 1.0
N A:GLY66 4.8 53.7 1.0
CA A:ASP63 4.9 60.5 1.0
C A:ASP63 4.9 59.5 1.0
C A:CYS68 4.9 41.8 1.0
C A:ASP65 4.9 55.8 1.0
CB A:GLU67 4.9 47.4 1.0
O A:ASP61 5.0 50.4 1.0

Calcium binding site 2 out of 2 in 3lk1

Go back to Calcium Binding Sites List in 3lk1
Calcium binding site 2 out of 2 in the X-Ray Structure of Bovine SC0322,Ca(2+)-S100B


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of X-Ray Structure of Bovine SC0322,Ca(2+)-S100B within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca91

b:41.8
occ:1.00
OE1 A:GLU31 2.3 40.6 1.0
O A:SER18 2.3 43.5 1.0
O A:GLU21 2.4 49.1 1.0
O A:ASP23 2.4 47.1 1.0
O A:HOH120 2.5 48.0 1.0
O A:LYS26 2.5 41.0 1.0
OE2 A:GLU31 2.6 44.9 1.0
CD A:GLU31 2.8 39.8 1.0
C A:SER18 3.4 42.2 1.0
C A:ASP23 3.5 50.9 1.0
C A:GLU21 3.6 52.2 1.0
C A:LYS26 3.7 40.9 1.0
CA A:SER18 3.9 39.4 1.0
N A:GLU21 4.0 49.8 1.0
N A:ASP23 4.2 52.9 1.0
C A:GLY22 4.3 54.5 1.0
OE1 A:GLU67 4.3 54.5 1.0
CG A:GLU31 4.4 38.6 1.0
CA A:GLU21 4.4 53.2 1.0
N A:LYS28 4.4 37.8 1.0
CA A:ASP23 4.4 53.0 1.0
N A:LYS24 4.4 53.2 1.0
CA A:LYS24 4.5 52.0 1.0
N A:LYS26 4.5 44.6 1.0
CA A:LEU27 4.5 36.7 1.0
N A:GLY19 4.5 44.0 1.0
N A:LEU27 4.6 37.5 1.0
N A:GLY22 4.6 54.9 1.0
CB A:SER18 4.6 39.1 1.0
O A:GLY22 4.6 55.9 1.0
CA A:LYS26 4.7 42.2 1.0
O A:TYR17 4.7 39.7 1.0
N A:ARG20 4.7 46.5 1.0
CA A:GLY22 4.8 55.6 1.0
C A:LYS24 4.8 50.2 1.0
CB A:ASP23 4.8 51.7 1.0
O A:HOH121 4.9 57.9 1.0
C A:LEU27 4.9 37.3 1.0
CG A:LYS28 4.9 42.4 1.0
CA A:GLY19 5.0 47.5 1.0
CB A:GLU21 5.0 52.9 1.0

Reference:

P.T.Wilder, T.H.Charpentier, M.A.Liriano, K.Gianni, K.M.Varney, E.Pozharski, A.Coop, E.A.Toth, A.D.Mackerell, D.J.Weber. In Vitro Screening and Structural Characterization of Inhibitors of the S100B-P53 Interaction. Int J High Throughput Screen V.2010 109 2010.
ISSN: ESSN 1179-1381
PubMed: 21132089
DOI: 10.2147/IJHTS.S8210
Page generated: Sat Jul 13 13:08:58 2024

Last articles

Zn in 9JYW
Zn in 9IR4
Zn in 9IR3
Zn in 9GMX
Zn in 9GMW
Zn in 9JEJ
Zn in 9ERF
Zn in 9ERE
Zn in 9EGV
Zn in 9EGW
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy