Calcium in PDB 3lnp: Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica

The structure of Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica, PDB code: 3lnp was solved by Y.Kim, O.Kagan, A.Savchenko, A.Edwards, A.Joachimiak, Midwest Center Forstructural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	34.25 / 2.10
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	77.902, 77.902, 143.754, 90.00, 90.00, 120.00
R / Rfree (%)	14.9 / 18.4

The binding sites of Calcium atom in the Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica (pdb code 3lnp). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica, PDB code: 3lnp:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca471 b:49.7 occ:1.00 O A:HOH694 2.3 32.4 1.0 O A:HOH596 2.3 32.9 1.0 OD2 A:ASP331 2.4 27.7 1.0 NE2 A:HIS88 2.4 28.7 1.0 NE2 A:HIS90 2.4 29.4 1.0 O A:HOH481 2.5 28.3 1.0 CG A:ASP331 3.2 25.4 1.0 CE1 A:HIS88 3.3 27.4 1.0 CE1 A:HIS90 3.3 29.3 1.0 OD1 A:ASP331 3.4 26.7 1.0 CD2 A:HIS88 3.4 25.9 1.0 CD2 A:HIS90 3.4 30.1 1.0 NE2 A:HIS243 3.6 34.2 1.0 CE1 A:HIS243 4.0 34.9 1.0 O A:HOH568 4.2 36.6 1.0 NE2 A:HIS280 4.2 30.0 1.0 O A:HOH766 4.4 45.3 1.0 O A:HOH611 4.4 34.4 1.0 ND1 A:HIS88 4.4 25.2 1.0 ND1 A:HIS90 4.5 29.9 1.0 O A:HOH634 4.5 48.2 1.0 CG A:HIS88 4.5 26.7 1.0 CG A:HIS90 4.6 29.6 1.0 CB A:ASP331 4.6 16.7 1.0 CE1 A:HIS280 4.8 29.1 1.0 CD2 A:HIS243 4.8 37.7 1.0 CA A:ASP331 4.9 23.6 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Amidohydrolase Family Protein OLEI01672_1_465 From Oleispira Antarctica within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca472 b:56.1 occ:1.00 OD1 A:ASN336 2.3 29.7 1.0 OE1 A:GLU304 2.3 34.5 1.0 O A:HOH604 2.4 32.6 1.0 O A:HOH606 2.4 44.7 1.0 O A:HOH605 2.4 29.8 1.0 OD1 A:ASP338 2.5 36.2 1.0 OD2 A:ASP338 2.8 52.3 1.0 CG A:ASP338 2.9 31.3 1.0 CD A:GLU304 3.3 30.5 1.0 CG A:ASN336 3.4 27.3 1.0 OE2 A:GLU304 3.7 35.0 1.0 ND2 A:ASN336 3.9 23.5 1.0 O A:ASN336 4.1 26.3 1.0 N A:ASP338 4.1 24.4 1.0 OG A:SER343 4.1 37.4 1.0 OE2 A:GLU344 4.2 28.2 1.0 C A:ASN336 4.2 25.1 1.0 CB A:ASP338 4.2 25.5 1.0 O A:ASP338 4.4 22.2 1.0 N A:ASN337 4.4 23.2 1.0 CA A:ASP338 4.6 22.3 1.0 CG A:GLU304 4.6 25.9 1.0 CB A:ASN336 4.6 22.1 1.0 CB A:SER343 4.7 26.0 1.0 C A:ASP338 4.7 25.7 1.0 CB A:GLU304 4.8 24.7 1.0 O A:HOH768 4.8 67.7 1.0 CA A:ASN336 5.0 22.6 1.0

M.Kube, T.N.Chernikova, Y.Al-Ramahi, A.Beloqui, N.Lopez-Cortez, M.E.Guazzaroni, H.J.Heipieper, S.Klages, O.R.Kotsyurbenko, I.Langer, T.Y.Nechitaylo, H.Lunsdorf, M.Fernandez, S.Juarez, S.Ciordia, A.Singer, O.Kagan, O.Egorova, P.A.Petit, P.Stogios, Y.Kim, A.Tchigvintsev, R.Flick, R.Denaro, M.Genovese, J.P.Albar, O.N.Reva, M.Martinez-Gomariz, H.Tran, M.Ferrer, A.Savchenko, A.F.Yakunin, M.M.Yakimov, O.V.Golyshina, R.Reinhardt, P.N.Golyshin. Genome Sequence and Functional Genomic Analysis of the Oil-Degrading Bacterium Oleispira Antarctica. Nat Commun V. 4 2156 2013.
ISSN: ESSN 2041-1723
PubMed: 23877221
DOI: 10.1038/NCOMMS3156