Calcium in PDB 3lum: Structure of Ulilysin Mutant M290L
Protein crystallography data
The structure of Structure of Ulilysin Mutant M290L, PDB code: 3lum
was solved by
C.Tallant,
R.Garcia-Castellanos,
U.Baumann,
F.X.Gomis-Ruth,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
46.28 /
1.70
|
|
Space group
|
C 2 2 21
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
97.310,
174.110,
124.690,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
16.3 /
19.5
|
Other elements in 3lum:
The structure of Structure of Ulilysin Mutant M290L also contains other interesting chemical elements:
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
11;
Binding sites:
The binding sites of Calcium atom in the Structure of Ulilysin Mutant M290L
(pdb code 3lum). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 11 binding sites of Calcium where determined in the
Structure of Ulilysin Mutant M290L, PDB code: 3lum:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 1 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca997
b:7.0
occ:1.00
|
O
|
A:TRP240
|
2.2
|
5.6
|
1.0
|
|
O
|
A:PRO249
|
2.3
|
9.2
|
1.0
|
|
O
|
A:GLN262
|
2.3
|
7.1
|
1.0
|
|
O
|
A:HOH413
|
2.4
|
8.9
|
1.0
|
|
OE2
|
A:GLU243
|
2.5
|
8.1
|
1.0
|
|
OE1
|
A:GLU243
|
2.5
|
7.6
|
1.0
|
|
O
|
A:ALA263
|
2.5
|
8.3
|
1.0
|
|
CD
|
A:GLU243
|
2.8
|
8.5
|
1.0
|
|
C
|
A:ALA263
|
3.3
|
7.6
|
1.0
|
|
C
|
A:TRP240
|
3.4
|
5.5
|
1.0
|
|
C
|
A:PRO249
|
3.4
|
9.9
|
1.0
|
|
C
|
A:GLN262
|
3.5
|
6.9
|
1.0
|
|
CA
|
A:ALA263
|
3.5
|
7.2
|
1.0
|
|
N
|
A:ALA263
|
4.0
|
7.5
|
1.0
|
|
CA
|
A:TRP240
|
4.1
|
4.9
|
1.0
|
|
CB
|
A:TRP240
|
4.2
|
4.8
|
1.0
|
|
CA
|
A:CYS250
|
4.3
|
10.8
|
1.0
|
|
CG
|
A:GLU243
|
4.3
|
8.1
|
1.0
|
|
N
|
A:CYS250
|
4.3
|
10.2
|
1.0
|
|
O
|
A:ARG252
|
4.3
|
8.6
|
1.0
|
|
O
|
A:HOH331
|
4.4
|
10.4
|
1.0
|
|
CA
|
A:PRO249
|
4.4
|
10.8
|
1.0
|
|
O
|
A:HOH352
|
4.5
|
11.2
|
1.0
|
|
N
|
A:GLY241
|
4.5
|
6.4
|
1.0
|
|
N
|
A:ASP264
|
4.5
|
7.8
|
1.0
|
|
CA
|
A:GLY241
|
4.7
|
6.8
|
1.0
|
|
C
|
A:CYS250
|
4.7
|
10.4
|
1.0
|
|
CD1
|
A:TRP240
|
4.7
|
5.7
|
1.0
|
|
CA
|
A:GLN262
|
4.7
|
7.1
|
1.0
|
|
N
|
A:SER251
|
4.8
|
10.2
|
1.0
|
|
OD1
|
A:ASN261
|
4.8
|
9.6
|
1.0
|
|
N
|
A:ARG252
|
4.8
|
9.1
|
1.0
|
|
N
|
A:GLN262
|
4.9
|
7.5
|
1.0
|
|
CG
|
A:TRP240
|
4.9
|
5.0
|
1.0
|
|
CB
|
A:ALA263
|
4.9
|
8.0
|
1.0
|
|
Calcium binding site 2 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 2 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca998
b:6.9
occ:1.00
|
OD1
|
A:ASP254
|
2.3
|
6.0
|
1.0
|
|
O
|
A:THR259
|
2.4
|
6.8
|
1.0
|
|
O
|
A:VAL256
|
2.5
|
7.1
|
1.0
|
|
O
|
A:HOH554
|
2.5
|
15.0
|
1.0
|
|
O
|
A:HOH359
|
2.5
|
8.9
|
1.0
|
|
O
|
A:HOH354
|
2.5
|
6.8
|
1.0
|
|
OG1
|
A:THR259
|
2.6
|
4.9
|
1.0
|
|
O
|
A:HOH409
|
2.6
|
6.9
|
1.0
|
|
C
|
A:THR259
|
3.4
|
6.5
|
1.0
|
|
CG
|
A:ASP254
|
3.4
|
6.0
|
1.0
|
|
C
|
A:VAL256
|
3.6
|
6.6
|
1.0
|
|
CB
|
A:THR259
|
3.6
|
4.9
|
1.0
|
|
OD2
|
A:ASP254
|
3.8
|
7.5
|
1.0
|
|
CA
|
A:THR259
|
3.9
|
6.2
|
1.0
|
|
N
|
A:THR259
|
4.1
|
5.4
|
1.0
|
|
N
|
A:VAL256
|
4.1
|
6.7
|
1.0
|
|
CA
|
A:VAL256
|
4.3
|
6.3
|
1.0
|
|
O
|
A:PRO260
|
4.3
|
8.1
|
1.0
|
|
C
|
A:PRO260
|
4.4
|
7.8
|
1.0
|
|
CB
|
A:VAL256
|
4.5
|
6.1
|
1.0
|
|
N
|
A:ASP254
|
4.5
|
6.8
|
1.0
|
|
N
|
A:PRO260
|
4.5
|
7.2
|
1.0
|
|
O
|
A:HOH491
|
4.5
|
17.6
|
1.0
|
|
O
|
A:HOH407
|
4.5
|
19.0
|
1.0
|
|
O
|
A:HOH593
|
4.5
|
22.8
|
1.0
|
|
N
|
A:ASN261
|
4.6
|
7.5
|
1.0
|
|
CB
|
A:ASP254
|
4.6
|
5.7
|
1.0
|
|
N
|
A:ASP257
|
4.6
|
7.6
|
1.0
|
|
O
|
A:HOH352
|
4.7
|
11.2
|
1.0
|
|
C
|
A:ASP257
|
4.8
|
7.2
|
1.0
|
|
O
|
A:ASP257
|
4.8
|
7.7
|
1.0
|
|
OG
|
A:SER253
|
4.9
|
9.1
|
1.0
|
|
CA
|
A:ASP257
|
4.9
|
7.5
|
1.0
|
|
CA
|
A:PRO260
|
4.9
|
7.5
|
1.0
|
|
CG2
|
A:THR259
|
4.9
|
6.8
|
1.0
|
|
CA
|
A:ASP254
|
4.9
|
6.0
|
1.0
|
|
O
|
A:ILE239
|
4.9
|
6.5
|
1.0
|
|
N
|
A:GLU255
|
5.0
|
6.7
|
1.0
|
|
CA
|
A:ASN261
|
5.0
|
8.0
|
1.0
|
|
Calcium binding site 3 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 3 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca1401
b:6.1
occ:1.00
|
O
|
A:HOH466
|
2.3
|
15.1
|
1.0
|
|
OD2
|
A:ASP152
|
2.3
|
5.5
|
1.0
|
|
OD2
|
C:ASP152
|
2.4
|
5.6
|
1.0
|
|
O
|
C:HOH497
|
2.4
|
15.1
|
1.0
|
|
O
|
A:HOH400
|
2.4
|
8.8
|
1.0
|
|
O
|
A:HOH397
|
2.5
|
9.1
|
1.0
|
|
CG
|
A:ASP152
|
3.5
|
4.3
|
1.0
|
|
CG
|
C:ASP152
|
3.5
|
5.5
|
1.0
|
|
CB
|
A:ASP152
|
4.2
|
5.0
|
1.0
|
|
O
|
A:HOH348
|
4.2
|
8.0
|
1.0
|
|
O
|
C:HOH372
|
4.2
|
6.7
|
1.0
|
|
CB
|
C:ASP152
|
4.2
|
4.9
|
1.0
|
|
O
|
C:SER151
|
4.3
|
5.4
|
1.0
|
|
O
|
A:SER151
|
4.4
|
6.2
|
1.0
|
|
OD1
|
A:ASP152
|
4.5
|
5.7
|
1.0
|
|
OD1
|
C:ASP152
|
4.5
|
4.6
|
1.0
|
|
C
|
A:SER151
|
4.7
|
5.8
|
1.0
|
|
C
|
C:SER151
|
4.7
|
5.9
|
1.0
|
|
O
|
A:THR150
|
4.7
|
7.3
|
1.0
|
|
OG1
|
C:THR200
|
4.7
|
4.7
|
1.0
|
|
OG1
|
A:THR200
|
4.7
|
5.4
|
1.0
|
|
O
|
C:THR150
|
4.8
|
7.4
|
1.0
|
|
CG2
|
C:THR200
|
4.9
|
3.8
|
1.0
|
|
O
|
A:HOH953
|
4.9
|
25.5
|
1.0
|
|
CG2
|
A:THR200
|
4.9
|
4.7
|
1.0
|
|
Calcium binding site 4 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 4 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca997
b:5.8
occ:1.00
|
O
|
B:TRP240
|
2.3
|
5.1
|
1.0
|
|
O
|
B:PRO249
|
2.3
|
7.8
|
1.0
|
|
O
|
B:GLN262
|
2.4
|
4.8
|
1.0
|
|
O
|
B:HOH354
|
2.5
|
6.2
|
1.0
|
|
OE2
|
B:GLU243
|
2.5
|
7.0
|
1.0
|
|
OE1
|
B:GLU243
|
2.5
|
5.5
|
1.0
|
|
O
|
B:ALA263
|
2.5
|
4.9
|
1.0
|
|
CD
|
B:GLU243
|
2.8
|
6.4
|
1.0
|
|
C
|
B:ALA263
|
3.3
|
5.0
|
1.0
|
|
C
|
B:TRP240
|
3.4
|
4.2
|
1.0
|
|
C
|
B:PRO249
|
3.5
|
8.4
|
1.0
|
|
C
|
B:GLN262
|
3.5
|
4.6
|
1.0
|
|
CA
|
B:ALA263
|
3.6
|
4.7
|
1.0
|
|
N
|
B:ALA263
|
4.0
|
4.4
|
1.0
|
|
CA
|
B:TRP240
|
4.1
|
4.2
|
1.0
|
|
CB
|
B:TRP240
|
4.2
|
3.0
|
1.0
|
|
CA
|
B:CYS250
|
4.3
|
8.1
|
1.0
|
|
CG
|
B:GLU243
|
4.3
|
7.2
|
1.0
|
|
N
|
B:CYS250
|
4.3
|
7.6
|
1.0
|
|
O
|
B:ARG252
|
4.3
|
9.1
|
1.0
|
|
CA
|
B:PRO249
|
4.4
|
9.4
|
1.0
|
|
O
|
B:HOH324
|
4.4
|
9.9
|
1.0
|
|
O
|
B:HOH338
|
4.4
|
7.1
|
1.0
|
|
N
|
B:GLY241
|
4.5
|
5.1
|
1.0
|
|
N
|
B:ASP264
|
4.6
|
4.9
|
1.0
|
|
C
|
B:CYS250
|
4.7
|
7.7
|
1.0
|
|
CD1
|
B:TRP240
|
4.7
|
5.4
|
1.0
|
|
CA
|
B:GLY241
|
4.7
|
4.7
|
1.0
|
|
CA
|
B:GLN262
|
4.7
|
4.5
|
1.0
|
|
OD1
|
B:ASN261
|
4.8
|
7.4
|
1.0
|
|
N
|
B:SER251
|
4.8
|
7.7
|
1.0
|
|
N
|
B:GLN262
|
4.9
|
4.2
|
1.0
|
|
CG
|
B:TRP240
|
4.9
|
4.3
|
1.0
|
|
N
|
B:ARG252
|
4.9
|
7.1
|
1.0
|
|
SG
|
B:CYS277
|
4.9
|
8.7
|
1.0
|
|
CB
|
B:ALA263
|
5.0
|
5.3
|
1.0
|
|
CB
|
B:PRO249
|
5.0
|
9.4
|
1.0
|
|
Calcium binding site 5 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 5 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca998
b:5.0
occ:1.00
|
OD1
|
B:ASP254
|
2.3
|
5.2
|
1.0
|
|
O
|
B:THR259
|
2.4
|
5.0
|
1.0
|
|
O
|
B:HOH341
|
2.5
|
4.5
|
1.0
|
|
O
|
B:VAL256
|
2.5
|
5.5
|
1.0
|
|
O
|
B:HOH480
|
2.5
|
10.6
|
1.0
|
|
O
|
B:HOH449
|
2.5
|
12.9
|
1.0
|
|
OG1
|
B:THR259
|
2.5
|
4.6
|
1.0
|
|
O
|
B:HOH367
|
2.6
|
8.7
|
1.0
|
|
CG
|
B:ASP254
|
3.3
|
5.9
|
1.0
|
|
C
|
B:THR259
|
3.4
|
4.4
|
1.0
|
|
C
|
B:VAL256
|
3.6
|
6.3
|
1.0
|
|
CB
|
B:THR259
|
3.6
|
3.9
|
1.0
|
|
OD2
|
B:ASP254
|
3.7
|
5.9
|
1.0
|
|
CA
|
B:THR259
|
3.9
|
4.2
|
1.0
|
|
N
|
B:VAL256
|
4.1
|
6.0
|
1.0
|
|
N
|
B:THR259
|
4.2
|
4.6
|
1.0
|
|
O
|
B:HOH661
|
4.3
|
24.9
|
1.0
|
|
CA
|
B:VAL256
|
4.3
|
6.1
|
1.0
|
|
O
|
B:PRO260
|
4.4
|
5.3
|
1.0
|
|
C
|
B:PRO260
|
4.4
|
4.5
|
1.0
|
|
N
|
B:ASP254
|
4.5
|
6.5
|
1.0
|
|
CB
|
B:VAL256
|
4.5
|
5.8
|
1.0
|
|
N
|
B:PRO260
|
4.6
|
4.3
|
1.0
|
|
CB
|
B:ASP254
|
4.6
|
6.4
|
1.0
|
|
O
|
B:HOH621
|
4.6
|
18.9
|
1.0
|
|
O
|
B:HOH338
|
4.6
|
7.1
|
1.0
|
|
N
|
B:ASN261
|
4.6
|
4.4
|
1.0
|
|
N
|
B:ASP257
|
4.7
|
6.7
|
1.0
|
|
O
|
B:ASP257
|
4.8
|
6.3
|
1.0
|
|
O
|
B:HOH389
|
4.8
|
12.9
|
1.0
|
|
C
|
B:ASP257
|
4.8
|
5.9
|
1.0
|
|
OG
|
B:SER253
|
4.8
|
8.0
|
1.0
|
|
CA
|
B:ASP257
|
4.8
|
7.0
|
1.0
|
|
CA
|
B:PRO260
|
4.9
|
4.8
|
1.0
|
|
O
|
B:ILE239
|
4.9
|
5.3
|
1.0
|
|
CA
|
B:ASP254
|
4.9
|
5.8
|
1.0
|
|
N
|
B:GLU255
|
4.9
|
6.7
|
1.0
|
|
CA
|
B:ASN261
|
5.0
|
4.9
|
1.0
|
|
CG2
|
B:THR259
|
5.0
|
3.3
|
1.0
|
|
Calcium binding site 6 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 6 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1401
b:4.5
occ:0.50
|
OD2
|
B:ASP152
|
2.4
|
6.7
|
1.0
|
|
O
|
B:HOH484
|
2.5
|
16.1
|
1.0
|
|
O
|
B:HOH481
|
2.6
|
8.1
|
1.0
|
|
CG
|
B:ASP152
|
3.6
|
5.0
|
1.0
|
|
O
|
B:HOH357
|
4.1
|
8.4
|
1.0
|
|
CB
|
B:ASP152
|
4.3
|
5.1
|
1.0
|
|
OD1
|
B:ASP152
|
4.5
|
4.8
|
1.0
|
|
O
|
B:SER151
|
4.6
|
5.3
|
1.0
|
|
O
|
B:HOH1354
|
4.6
|
26.6
|
0.5
|
|
OG1
|
B:THR200
|
4.6
|
5.5
|
1.0
|
|
CG2
|
B:THR200
|
4.9
|
5.3
|
1.0
|
|
C
|
B:SER151
|
4.9
|
5.8
|
1.0
|
|
O
|
B:THR150
|
4.9
|
7.6
|
1.0
|
|
CB
|
B:THR200
|
5.0
|
4.4
|
1.0
|
|
Calcium binding site 7 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 7 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca997
b:6.9
occ:1.00
|
O
|
C:TRP240
|
2.3
|
4.8
|
1.0
|
|
O
|
C:PRO249
|
2.3
|
8.6
|
1.0
|
|
O
|
C:GLN262
|
2.3
|
5.4
|
1.0
|
|
O
|
C:HOH349
|
2.5
|
7.8
|
1.0
|
|
O
|
C:ALA263
|
2.5
|
5.2
|
1.0
|
|
OE1
|
C:GLU243
|
2.5
|
6.3
|
1.0
|
|
OE2
|
C:GLU243
|
2.5
|
7.6
|
1.0
|
|
CD
|
C:GLU243
|
2.8
|
6.1
|
1.0
|
|
C
|
C:ALA263
|
3.3
|
5.1
|
1.0
|
|
C
|
C:TRP240
|
3.4
|
4.6
|
1.0
|
|
C
|
C:PRO249
|
3.4
|
9.5
|
1.0
|
|
C
|
C:GLN262
|
3.5
|
5.2
|
1.0
|
|
CA
|
C:ALA263
|
3.6
|
5.5
|
1.0
|
|
N
|
C:ALA263
|
4.0
|
4.7
|
1.0
|
|
CA
|
C:TRP240
|
4.1
|
4.7
|
1.0
|
|
CB
|
C:TRP240
|
4.2
|
3.8
|
1.0
|
|
CG
|
C:GLU243
|
4.3
|
7.7
|
1.0
|
|
CA
|
C:CYS250
|
4.3
|
9.0
|
1.0
|
|
N
|
C:CYS250
|
4.3
|
8.7
|
1.0
|
|
O
|
C:HOH332
|
4.3
|
10.0
|
1.0
|
|
O
|
C:ARG252
|
4.4
|
9.5
|
1.0
|
|
CA
|
C:PRO249
|
4.4
|
10.1
|
1.0
|
|
O
|
C:HOH326
|
4.4
|
6.2
|
1.0
|
|
N
|
C:GLY241
|
4.5
|
5.1
|
1.0
|
|
N
|
C:ASP264
|
4.5
|
5.4
|
1.0
|
|
C
|
C:CYS250
|
4.7
|
8.7
|
1.0
|
|
CA
|
C:GLY241
|
4.7
|
5.3
|
1.0
|
|
CD1
|
C:TRP240
|
4.7
|
5.4
|
1.0
|
|
CA
|
C:GLN262
|
4.7
|
5.2
|
1.0
|
|
N
|
C:SER251
|
4.8
|
8.7
|
1.0
|
|
OD1
|
C:ASN261
|
4.8
|
7.0
|
1.0
|
|
N
|
C:ARG252
|
4.9
|
8.3
|
1.0
|
|
N
|
C:GLN262
|
4.9
|
5.2
|
1.0
|
|
CG
|
C:TRP240
|
4.9
|
4.4
|
1.0
|
|
SG
|
C:CYS277
|
5.0
|
9.4
|
1.0
|
|
Calcium binding site 8 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 8 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca998
b:5.3
occ:1.00
|
OD1
|
C:ASP254
|
2.3
|
4.1
|
1.0
|
|
O
|
C:THR259
|
2.4
|
6.1
|
1.0
|
|
O
|
C:VAL256
|
2.4
|
5.4
|
1.0
|
|
O
|
C:HOH355
|
2.4
|
4.9
|
1.0
|
|
O
|
C:HOH567
|
2.5
|
10.5
|
1.0
|
|
O
|
C:HOH365
|
2.5
|
12.8
|
1.0
|
|
OG1
|
C:THR259
|
2.6
|
5.6
|
1.0
|
|
O
|
C:HOH404
|
2.6
|
8.4
|
1.0
|
|
CG
|
C:ASP254
|
3.4
|
5.9
|
1.0
|
|
C
|
C:THR259
|
3.4
|
5.4
|
1.0
|
|
C
|
C:VAL256
|
3.6
|
5.4
|
1.0
|
|
CB
|
C:THR259
|
3.6
|
5.0
|
1.0
|
|
OD2
|
C:ASP254
|
3.8
|
4.9
|
1.0
|
|
CA
|
C:THR259
|
3.9
|
6.0
|
1.0
|
|
N
|
C:THR259
|
4.1
|
5.7
|
1.0
|
|
N
|
C:VAL256
|
4.1
|
5.9
|
1.0
|
|
O
|
C:HOH647
|
4.3
|
22.6
|
1.0
|
|
CA
|
C:VAL256
|
4.3
|
5.4
|
1.0
|
|
O
|
C:PRO260
|
4.3
|
6.7
|
1.0
|
|
C
|
C:PRO260
|
4.4
|
6.0
|
1.0
|
|
CB
|
C:VAL256
|
4.5
|
5.0
|
1.0
|
|
N
|
C:ASP254
|
4.5
|
7.0
|
1.0
|
|
O
|
C:HOH523
|
4.5
|
18.9
|
1.0
|
|
N
|
C:PRO260
|
4.6
|
6.0
|
1.0
|
|
N
|
C:ASN261
|
4.6
|
6.5
|
1.0
|
|
CB
|
C:ASP254
|
4.6
|
6.6
|
1.0
|
|
N
|
C:ASP257
|
4.6
|
6.3
|
1.0
|
|
O
|
C:HOH326
|
4.7
|
6.2
|
1.0
|
|
O
|
C:ASP257
|
4.7
|
7.1
|
1.0
|
|
C
|
C:ASP257
|
4.8
|
6.1
|
1.0
|
|
O
|
C:HOH572
|
4.8
|
15.0
|
1.0
|
|
OG
|
C:SER253
|
4.8
|
8.2
|
1.0
|
|
CA
|
C:ASP257
|
4.8
|
6.7
|
1.0
|
|
O
|
C:ILE239
|
4.9
|
5.0
|
1.0
|
|
CA
|
C:PRO260
|
4.9
|
5.8
|
1.0
|
|
CA
|
C:ASN261
|
4.9
|
5.9
|
1.0
|
|
CG2
|
C:THR259
|
4.9
|
5.7
|
1.0
|
|
CA
|
C:ASP254
|
5.0
|
6.2
|
1.0
|
|
N
|
C:GLU255
|
5.0
|
6.7
|
1.0
|
|
Calcium binding site 9 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 9 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca997
b:7.0
occ:1.00
|
O
|
D:TRP240
|
2.3
|
5.8
|
1.0
|
|
O
|
D:PRO249
|
2.3
|
10.1
|
1.0
|
|
O
|
D:GLN262
|
2.4
|
6.2
|
1.0
|
|
O
|
D:HOH398
|
2.4
|
11.2
|
1.0
|
|
OE2
|
D:GLU243
|
2.4
|
6.6
|
1.0
|
|
O
|
D:ALA263
|
2.5
|
7.0
|
1.0
|
|
OE1
|
D:GLU243
|
2.5
|
6.6
|
1.0
|
|
CD
|
D:GLU243
|
2.8
|
6.7
|
1.0
|
|
C
|
D:ALA263
|
3.3
|
7.0
|
1.0
|
|
C
|
D:TRP240
|
3.4
|
5.6
|
1.0
|
|
C
|
D:GLN262
|
3.5
|
5.9
|
1.0
|
|
C
|
D:PRO249
|
3.5
|
10.9
|
1.0
|
|
CA
|
D:ALA263
|
3.6
|
7.0
|
1.0
|
|
N
|
D:ALA263
|
4.0
|
6.8
|
1.0
|
|
CA
|
D:TRP240
|
4.1
|
5.0
|
1.0
|
|
CB
|
D:TRP240
|
4.2
|
4.7
|
1.0
|
|
O
|
D:ARG252
|
4.3
|
9.3
|
1.0
|
|
CG
|
D:GLU243
|
4.3
|
7.8
|
1.0
|
|
CA
|
D:CYS250
|
4.3
|
10.3
|
1.0
|
|
N
|
D:CYS250
|
4.3
|
10.4
|
1.0
|
|
O
|
D:HOH790
|
4.4
|
8.2
|
1.0
|
|
O
|
D:HOH342
|
4.4
|
8.5
|
1.0
|
|
CA
|
D:PRO249
|
4.4
|
11.6
|
1.0
|
|
N
|
D:GLY241
|
4.5
|
6.4
|
1.0
|
|
N
|
D:ASP264
|
4.5
|
6.8
|
1.0
|
|
CD1
|
D:TRP240
|
4.7
|
6.9
|
1.0
|
|
CA
|
D:GLY241
|
4.7
|
6.2
|
1.0
|
|
CA
|
D:GLN262
|
4.7
|
6.1
|
1.0
|
|
C
|
D:CYS250
|
4.7
|
10.2
|
1.0
|
|
N
|
D:SER251
|
4.8
|
9.6
|
1.0
|
|
N
|
D:ARG252
|
4.8
|
8.8
|
1.0
|
|
OD1
|
D:ASN261
|
4.8
|
10.2
|
1.0
|
|
N
|
D:GLN262
|
4.8
|
6.1
|
1.0
|
|
CG
|
D:TRP240
|
4.9
|
4.3
|
1.0
|
|
CB
|
D:ALA263
|
5.0
|
7.4
|
1.0
|
|
Calcium binding site 10 out
of 11 in 3lum
Go back to
Calcium Binding Sites List in 3lum
Calcium binding site 10 out
of 11 in the Structure of Ulilysin Mutant M290L
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Structure of Ulilysin Mutant M290L within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca998
b:6.0
occ:1.00
|
OD1
|
D:ASP254
|
2.3
|
5.5
|
1.0
|
|
O
|
D:THR259
|
2.4
|
5.8
|
1.0
|
|
O
|
D:VAL256
|
2.5
|
6.2
|
1.0
|
|
O
|
D:HOH387
|
2.5
|
14.6
|
1.0
|
|
O
|
D:HOH326
|
2.5
|
7.7
|
1.0
|
|
O
|
D:HOH346
|
2.5
|
8.1
|
1.0
|
|
O
|
D:HOH369
|
2.5
|
6.5
|
1.0
|
|
OG1
|
D:THR259
|
2.5
|
4.2
|
1.0
|
|
CG
|
D:ASP254
|
3.4
|
6.2
|
1.0
|
|
C
|
D:THR259
|
3.4
|
5.7
|
1.0
|
|
C
|
D:VAL256
|
3.6
|
6.6
|
1.0
|
|
CB
|
D:THR259
|
3.6
|
5.4
|
1.0
|
|
OD2
|
D:ASP254
|
3.8
|
5.5
|
1.0
|
|
CA
|
D:THR259
|
3.9
|
5.7
|
1.0
|
|
N
|
D:VAL256
|
4.1
|
6.7
|
1.0
|
|
N
|
D:THR259
|
4.1
|
5.1
|
1.0
|
|
CA
|
D:VAL256
|
4.3
|
6.6
|
1.0
|
|
O
|
D:PRO260
|
4.4
|
7.6
|
1.0
|
|
O
|
D:HOH556
|
4.4
|
19.4
|
1.0
|
|
C
|
D:PRO260
|
4.4
|
7.0
|
1.0
|
|
CB
|
D:VAL256
|
4.5
|
6.1
|
1.0
|
|
N
|
D:ASP254
|
4.5
|
7.9
|
1.0
|
|
N
|
D:PRO260
|
4.5
|
6.7
|
1.0
|
|
O
|
D:HOH738
|
4.6
|
21.8
|
1.0
|
|
CB
|
D:ASP254
|
4.6
|
7.5
|
1.0
|
|
N
|
D:ASN261
|
4.7
|
7.5
|
1.0
|
|
N
|
D:ASP257
|
4.7
|
6.5
|
1.0
|
|
O
|
D:HOH342
|
4.7
|
8.5
|
1.0
|
|
O
|
D:ASP257
|
4.8
|
7.5
|
1.0
|
|
C
|
D:ASP257
|
4.8
|
6.7
|
1.0
|
|
OG
|
D:SER253
|
4.8
|
9.7
|
1.0
|
|
CA
|
D:ASP257
|
4.9
|
6.8
|
1.0
|
|
CG2
|
D:THR259
|
4.9
|
6.1
|
1.0
|
|
O
|
D:ILE239
|
4.9
|
5.8
|
1.0
|
|
CA
|
D:PRO260
|
4.9
|
6.8
|
1.0
|
|
CA
|
D:ASP254
|
4.9
|
6.9
|
1.0
|
|
N
|
D:GLU255
|
5.0
|
7.3
|
1.0
|
|
CA
|
D:ASN261
|
5.0
|
7.3
|
1.0
|
|
Reference:
C.Tallant,
R.Garcia-Castellanos,
U.Baumann,
F.X.Gomis-Ruth.
On the Relevance of the Met-Turn Methionine in Metzincins. J.Biol.Chem. V. 285 13951 2010.
ISSN: ISSN 0021-9258
PubMed: 20202937
DOI: 10.1074/JBC.M109.083378
Page generated: Sat Dec 12 04:19:50 2020
|
