Calcium in PDB 3lv4: Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14.

The structure of Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14., PDB code: 3lv4 was solved by S.Vorobiev, M.Abashidze, J.Seetharaman, R.L.Belote, C.Ciccosanti, S.Sahdev, R.Xiao, T.B.Acton, J.K.Everett, G.T.Montelione, L.Tong, J.F.Hunt, Northeast Structural Genomics Consortium (Nesg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	45.24 / 1.70
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	210.585, 60.327, 73.122, 90.00, 97.47, 90.00
R / Rfree (%)	14.6 / 19

The binding sites of Calcium atom in the Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14. (pdb code 3lv4). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 5 binding sites of Calcium where determined in the Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14., PDB code: 3lv4:
Jump to Calcium binding site number: 1; 2; 3; 4; 5;

Calcium binding site 1 out of 5 in the Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca501 b:9.3 occ:1.00 O A:HOH734 2.4 7.8 1.0 O A:HOH714 2.5 7.5 1.0 O A:HOH703 2.5 7.3 1.0 O A:HOH707 2.5 8.2 1.0 O A:HOH709 2.5 7.3 1.0 O A:HOH702 2.5 8.7 1.0 NE2 A:HIS318 2.6 9.2 1.0 CD2 A:HIS318 3.3 8.1 1.0 CE1 A:HIS318 3.7 8.7 1.0 O A:PRO176 4.0 7.4 1.0 O A:PRO106 4.3 9.5 1.0 O A:ALA230 4.3 12.5 1.0 OG A:SER44 4.4 10.4 1.0 O A:ASN319 4.5 11.6 1.0 CG A:HIS318 4.6 7.3 1.0 CB A:SER44 4.6 9.0 1.0 O A:ASP42 4.6 8.9 1.0 CB A:ALA105 4.7 8.6 1.0 ND1 A:HIS318 4.7 7.0 1.0 CD2 A:TYR231 4.8 6.2 1.0 O A:ASP175 4.8 10.6 1.0 CA A:GLY229 4.9 7.3 1.0 C A:PRO176 4.9 7.7 1.0 C A:ASP175 4.9 9.7 1.0

Calcium binding site 2 out of 5 in the Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca504 b:17.7 occ:1.00 OD1 A:ASN308 2.4 20.7 1.0 OE2 A:GLU385 2.4 13.7 1.0 OE2 A:GLU402 2.5 20.7 1.0 O A:HOH732 2.5 13.9 1.0 O A:HOH1046 2.7 31.4 1.0 O A:HOH1162 2.8 40.5 1.0 CG A:ASN308 3.3 22.4 1.0 CD A:GLU402 3.4 21.0 1.0 CD A:GLU385 3.5 12.6 1.0 CG A:GLU402 3.6 16.6 1.0 ND2 A:ASN308 3.7 24.8 1.0 OE1 A:GLU385 3.8 11.5 1.0 O A:HOH944 4.1 21.8 1.0 OE1 A:GLU402 4.6 26.0 1.0 CB A:ASN308 4.7 16.9 1.0 CG A:GLU385 4.7 10.3 1.0 CA A:ASN308 5.0 13.6 1.0

Calcium binding site 3 out of 5 in the Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14. within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca505 b:19.8 occ:1.00 O A:HOH815 2.5 14.9 1.0 OE1 A:GLU274 2.5 12.1 1.0 O A:HOH1270 2.5 27.5 1.0 O A:HOH861 2.6 18.1 1.0 O A:HOH925 2.6 16.1 1.0 O A:HOH1137 2.6 26.6 1.0 OE2 A:GLU274 2.6 12.6 1.0 O A:HOH1110 2.7 29.9 1.0 CD A:GLU274 2.9 12.7 1.0 NE2 A:HIS276 4.2 12.2 1.0 O A:HOH1063 4.3 25.3 1.0 CG A:GLU274 4.4 11.0 1.0 O A:PRO296 4.6 11.2 1.0 O A:HOH1211 4.7 29.7 1.0 O A:HOH753 4.7 8.8 1.0 O A:HOH1365 4.7 26.8 1.0 O A:HOH1363 4.8 44.8 1.0 CD2 A:HIS276 4.8 8.1 1.0 CG A:GLU461 4.9 12.8 1.0 O A:GLU461 4.9 10.1 1.0

Calcium binding site 4 out of 5 in the Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca502 b:10.2 occ:1.00 O B:HOH711 2.5 10.8 1.0 O B:HOH773 2.5 9.4 1.0 O B:HOH706 2.5 9.6 1.0 O B:HOH726 2.5 9.8 1.0 O B:HOH713 2.5 8.7 1.0 O B:HOH741 2.6 11.0 1.0 NE2 B:HIS318 2.6 13.1 1.0 CD2 B:HIS318 3.3 12.5 1.0 CE1 B:HIS318 3.7 11.8 1.0 O B:PRO176 4.0 11.1 1.0 O B:PRO106 4.3 11.2 1.0 O B:ALA230 4.4 11.4 1.0 O B:ASN319 4.5 10.8 1.0 OG B:SER44 4.5 13.1 1.0 CG B:HIS318 4.6 9.8 1.0 CB B:ALA105 4.6 12.0 1.0 O B:ASP42 4.7 10.9 1.0 CB B:SER44 4.7 9.9 1.0 ND1 B:HIS318 4.7 8.7 1.0 CD2 B:TYR231 4.8 11.5 1.0 O B:ASP175 4.8 12.1 1.0 CA B:GLY229 4.8 12.0 1.0 C B:PRO176 4.9 11.0 1.0 C B:ASP175 4.9 10.2 1.0

Calcium binding site 5 out of 5 in the Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14.


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. Northeast Structural Genomics Consortium Target BIR14. within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca503 b:15.8 occ:1.00 OD1 B:ASN308 2.4 19.4 1.0 OE2 B:GLU402 2.4 15.3 1.0 OE2 B:GLU385 2.4 15.6 1.0 O B:HOH817 2.6 15.1 1.0 O B:HOH985 2.6 21.4 1.0 O B:HOH1146 2.8 43.5 1.0 O B:HOH951 2.9 33.2 1.0 CD B:GLU402 3.4 16.9 1.0 CG B:ASN308 3.4 19.4 1.0 CD B:GLU385 3.4 13.4 1.0 CG B:GLU402 3.6 14.6 1.0 ND2 B:ASN308 3.7 21.3 1.0 OE1 B:GLU385 3.8 12.3 1.0 O B:HOH924 4.0 20.7 1.0 OE1 B:GLU402 4.5 21.9 1.0 CG B:GLU385 4.7 12.1 1.0 CB B:ASN308 4.7 14.4 1.0 CD2 B:LEU470 4.7 31.2 1.0

S.Vorobiev, M.Abashidze, J.Seetharaman, R.L.Belote, C.Ciccosanti, S.Sahdev, R.Xiao, T.B.Acton, J.K.Everett, G.T.Montelione, L.Tong, J.F.Hunt. Crystal Structure of the Glycoside Hydrolase, Family 43 Yxia Protein From Bacillus Licheniformis. To Be Published.