Calcium in PDB 3lyb: Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae

The structure of Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae, PDB code: 3lyb was solved by U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo, New York Sgx Research Centerfor Structural Genomics (Nysgxrc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.24 / 2.66
Space group	I 2 3
Cell size a, b, c (Å), α, β, γ (°)	166.557, 166.557, 166.557, 90.00, 90.00, 90.00
R / Rfree (%)	19.3 / 24.8

The binding sites of Calcium atom in the Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae (pdb code 3lyb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae, PDB code: 3lyb:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca166 b:79.3 occ:1.00 O A:HOH174 2.3 44.0 1.0 O A:HOH175 2.4 69.1 1.0 OE1 A:GLU132 2.7 33.5 1.0 O A:HOH176 2.9 59.3 1.0 CD A:GLU132 3.5 35.1 1.0 OE2 A:GLU132 3.5 40.0 1.0 O A:HOH170 4.3 26.1 1.0 CG A:GLU132 5.0 32.3 1.0

Calcium binding site 2 out of 4 in the Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca166 b:52.3 occ:0.50 OD1 B:ASN41 2.4 49.5 1.0 OD1 B:ASP45 2.8 42.9 1.0 OD2 B:ASP45 2.9 42.3 1.0 CG B:ASP45 3.2 41.9 1.0 CG B:ASN41 3.5 45.6 1.0 CG2 B:THR38 3.9 55.4 1.0 ND2 B:ASN41 4.0 49.4 1.0 O B:ILE39 4.3 47.8 1.0 N B:ASN41 4.7 41.8 1.0 CB B:ASP45 4.7 40.2 1.0 CB B:ASN41 4.8 42.5 1.0

Calcium binding site 3 out of 4 in the Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca167 b:72.2 occ:1.00 O B:HOH175 2.4 50.9 1.0 O B:HOH176 2.5 52.8 1.0 OE1 B:GLU132 2.7 35.0 1.0 OE2 B:GLU132 3.4 37.7 1.0 CD B:GLU132 3.5 33.8 1.0 CG B:GLU132 4.9 28.3 1.0

Calcium binding site 4 out of 4 in the Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca166 b:72.2 occ:1.00 O D:HOH171 2.4 42.2 1.0 O D:HOH173 2.4 41.3 1.0 OD2 D:ASP105 3.1 38.0 1.0 O D:HOH172 3.1 36.8 1.0 OD1 D:ASP105 3.7 38.7 1.0 CG D:ASP105 3.7 35.4 1.0 OD1 D:ASN103 4.4 26.3 1.0 OE1 D:GLN129 4.8 31.4 1.0

U.A.Ramagopal, R.Toro, S.K.Burley, S.C.Almo. Structure of Putative Endoribonuclease(KP1_3112) From Klebsiella Pneumoniae To Be Published.