Calcium in PDB 3m1f: Crosslinked Complex of Actin with First W Domain of Vibrio Parahaemolyticus Vopl

The structure of Crosslinked Complex of Actin with First W Domain of Vibrio Parahaemolyticus Vopl, PDB code: 3m1f was solved by S.Namgoong, R.Dominguez, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.51 / 2.89
Space group	P 21 21 21
Cell size a, b, c (Å), α, β, γ (°)	66.606, 76.363, 86.137, 90.00, 90.00, 90.00
R / Rfree (%)	21.2 / 26.5

The binding sites of Calcium atom in the Crosslinked Complex of Actin with First W Domain of Vibrio Parahaemolyticus Vopl (pdb code 3m1f). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crosslinked Complex of Actin with First W Domain of Vibrio Parahaemolyticus Vopl, PDB code: 3m1f:

Calcium binding site 1 out of 1 in the Crosslinked Complex of Actin with First W Domain of Vibrio Parahaemolyticus Vopl


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crosslinked Complex of Actin with First W Domain of Vibrio Parahaemolyticus Vopl within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca401 b:57.4 occ:1.00 O1B A:ATP400 2.2 52.2 1.0 O2G A:ATP400 2.3 52.0 1.0 PG A:ATP400 3.3 51.2 1.0 PB A:ATP400 3.5 56.5 1.0 O3G A:ATP400 3.6 52.5 1.0 CA A:GLY13 3.7 51.4 1.0 O3B A:ATP400 3.8 56.6 1.0 OE1 A:GLN137 3.8 56.1 1.0 CD A:GLN137 4.2 50.6 1.0 O3A A:ATP400 4.3 54.7 1.0 OD1 A:ASP11 4.3 51.5 1.0 N A:GLY13 4.5 50.8 1.0 OD2 A:ASP11 4.5 56.5 1.0 NZ A:LYS18 4.6 49.2 1.0 NE2 A:GLN137 4.6 52.0 1.0 O2B A:ATP400 4.7 52.4 1.0 O1G A:ATP400 4.7 50.1 1.0 O1A A:ATP400 4.7 54.4 1.0 CG A:GLN137 4.8 49.3 1.0 O A:ASN12 4.8 51.9 1.0 C A:GLY13 4.8 52.7 1.0 N A:SER14 4.8 52.8 1.0 CG A:ASP11 4.8 54.3 1.0 OD2 A:ASP154 4.9 56.3 1.0 C A:ASN12 5.0 52.8 1.0

G.Rebowski, S.Namgoong, M.Boczkowska, P.C.Leavis, J.Navaza, R.Dominguez. Structure of A Longitudinal Actin Dimer Assembled By Tandem W Domains: Implications For Actin Filament Nucleation. J.Mol.Biol. V. 403 11 2010.
ISSN: ISSN 0022-2836
PubMed: 20804767
DOI: 10.1016/J.JMB.2010.08.040