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Calcium in PDB 3m6l: Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion

Enzymatic activity of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion

All present enzymatic activity of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion:
2.2.1.1;

Protein crystallography data

The structure of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion, PDB code: 3m6l was solved by B.Nocek, M.Makowska-Grzyska, N.Maltseva, A.Joachimiak, W.Anderson, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 40.00 / 1.59
Space group C 1 2 1
Cell size a, b, c (Å), α, β, γ (°) 130.924, 71.462, 69.617, 90.00, 109.48, 90.00
R / Rfree (%) 16 / 20.1

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion (pdb code 3m6l). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion, PDB code: 3m6l:

Calcium binding site 1 out of 1 in 3m6l

Go back to Calcium Binding Sites List in 3m6l
Calcium binding site 1 out of 1 in the Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca801

b:16.8
occ:1.00
 O2B A:TPP5001 2.3 20.5 1.0
O2A A:TPP5001 2.3 19.1 1.0
OD2 A:ASP152 2.3 17.5 1.0
OD1 A:ASN182 2.3 17.7 1.0
O A:ILE184 2.3 18.6 1.0
O A:HOH794 2.4 19.9 1.0
CG A:ASN182 3.2 17.5 1.0
CG A:ASP152 3.3 17.8 1.0
ND2 A:ASN182 3.5 17.3 1.0
PA A:TPP5001 3.5 21.7 1.0
C A:ILE184 3.5 18.4 1.0
PB A:TPP5001 3.5 24.5 1.0
O3A A:TPP5001 3.7 19.6 1.0
CB A:ASP152 3.8 17.6 1.0
N A:ILE184 4.0 16.3 1.0
O3B A:TPP5001 4.2 34.5 1.0
N A:ASP152 4.3 16.1 1.0
CA A:ILE184 4.3 17.5 1.0
OD1 A:ASP152 4.4 21.5 1.0
O1A A:TPP5001 4.4 23.4 1.0
O A:HOH1086 4.5 29.6 1.0
N A:SER185 4.5 19.3 1.0
CB A:ASN182 4.6 17.7 1.0
O A:ASP180 4.6 19.9 1.0
O7 A:TPP5001 4.6 29.8 1.0
O1B A:TPP5001 4.6 30.2 1.0
CA A:ASP152 4.7 17.9 1.0
N A:ASN182 4.7 17.6 1.0
CA A:SER185 4.7 20.7 1.0
CG2 A:VAL190 4.7 22.6 1.0
CB A:ILE184 4.7 18.1 1.0
N A:ASN183 4.8 17.7 1.0
CA A:ASN182 4.9 18.7 1.0
C A:ASN182 4.9 18.7 1.0

Reference:

B.Nocek, M.Makowska-Grzyska, N.Maltseva, S.Grimshaw, A.Joachimiak, W.Anderson. Crystal Structure of Transketolase in Complex with Thiamine Diphosphate, Ribose-5-Phosphate and Calcium Ion To Be Published.
Page generated: Sat Jul 13 13:27:45 2024

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