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Calcium in PDB 3n08: Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx

Protein crystallography data

The structure of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 3n08 was solved by J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, A.Savchenko, W.F.Anderson, Centerfor Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 26.19 / 1.25
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 37.115, 37.847, 55.101, 105.44, 96.50, 108.36
R / Rfree (%) 15.2 / 17.3

Other elements in 3n08:

The structure of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx also contains other interesting chemical elements:

Chlorine (Cl) 4 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx (pdb code 3n08). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx, PDB code: 3n08:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in 3n08

Go back to Calcium Binding Sites List in 3n08
Calcium binding site 1 out of 3 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca151

b:11.4
occ:0.88
O A:HOH348 2.4 13.2 1.0
O A:HOH251 2.4 14.8 1.0
OE1 A:GLU92 2.5 13.1 1.0
OE2 A:GLU92 2.6 15.8 1.0
CD A:GLU92 2.9 13.7 1.0
O A:HOH190 4.2 20.6 1.0
HA A:GLU92 4.4 12.8 1.0
CG A:GLU92 4.4 15.0 1.0
O A:HOH286 4.4 25.0 1.0
O A:GLY91 4.5 15.3 1.0
HG2 A:GLU92 4.8 17.9 1.0
O A:HOH439 4.8 24.5 1.0
HG3 A:GLU92 4.8 17.9 1.0

Calcium binding site 2 out of 3 in 3n08

Go back to Calcium Binding Sites List in 3n08
Calcium binding site 2 out of 3 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca152

b:10.2
occ:0.67
O A:HOH252 2.4 16.0 1.0
OD2 A:ASP120 2.5 15.2 1.0
CG A:ASP120 3.5 16.6 1.0
OD1 A:ASP120 3.9 16.4 1.0
O A:HOH225 4.2 20.6 1.0
O A:HOH198 4.7 11.3 1.0
CB A:ASP120 4.8 15.0 1.0
HB2 A:ASP120 4.8 17.9 1.0

Calcium binding site 3 out of 3 in 3n08

Go back to Calcium Binding Sites List in 3n08
Calcium binding site 3 out of 3 in the Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca153

b:11.2
occ:0.88
O A:HOH194 2.3 13.8 1.0
O A:HOH308 2.5 17.2 1.0
HZ2 A:LYS17 3.5 22.2 1.0
HZ1 A:LYS17 4.1 22.2 1.0
NZ A:LYS17 4.1 18.5 1.0
HZ3 A:LYS17 4.3 22.2 1.0
OE2 A:GLU77 4.7 22.9 1.0
OE1 A:GLU77 4.8 19.6 1.0
O A:HOH202 4.8 14.8 1.0
O A:HOH186 4.9 22.4 1.0

Reference:

J.S.Brunzelle, Z.Wawrzak, O.Onopriyenko, A.Savchenko, W.F.Anderson, Center For Structural Genomics Of Infectious Diseases(Csgid). 1.25 Angstrom Crystal Structure of A Putative Phosphatidylethanolamine-Binding Protein (Pebp) Homolog CT736 From Chlamydia Trachomatis D/Uw-3/Cx To Be Published.
Page generated: Sat Dec 12 04:21:31 2020

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