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Calcium in PDB 3nju: Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution

Enzymatic activity of Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution

All present enzymatic activity of Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution:
3.1.1.4;

Protein crystallography data

The structure of Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution, PDB code: 3nju was solved by S.Kaushik, R.Prem Kumar, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.09 / 1.40
Space group P 41
Cell size a, b, c (Å), α, β, γ (°) 42.074, 42.074, 64.253, 90.00, 90.00, 90.00
R / Rfree (%) 17.4 / 22.4

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution (pdb code 3nju). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution, PDB code: 3nju:

Calcium binding site 1 out of 1 in 3nju

Go back to Calcium Binding Sites List in 3nju
Calcium binding site 1 out of 1 in the Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Complex of Group I Phospholipase A2 with 4- Methoxy-Benzoicacid at 1.4A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca122

b:29.4
occ:1.00
 O A:GLY32 2.3 32.8 1.0
O A:GLY30 2.4 25.8 1.0
O2 A:ANN121 2.5 38.6 1.0
O A:TYR28 2.7 17.1 1.0
OD1 A:ASP49 2.7 19.0 1.0
OD2 A:ASP49 2.8 21.1 1.0
O A:HOH296 3.0 39.8 1.0
CG A:ASP49 3.0 19.1 1.0
C1 A:ANN121 3.4 36.9 1.0
C A:GLY32 3.5 33.9 1.0
C A:GLY30 3.6 27.6 1.0
O1 A:ANN121 3.6 37.9 1.0
C A:TYR28 3.7 17.5 1.0
O A:HOH331 3.8 41.8 1.0
N A:GLY30 3.9 22.2 1.0
O A:HOH242 4.0 36.9 1.0
O A:HOH313 4.1 45.6 1.0
N A:GLY32 4.1 34.8 1.0
C A:LYS31 4.2 35.4 1.0
O A:HOH371 4.3 38.4 1.0
CA A:GLY30 4.3 25.7 1.0
CB A:ASP49 4.3 14.8 1.0
N A:GLY33 4.4 28.5 1.0
O A:LYS31 4.4 39.2 1.0
O A:HOH240 4.4 24.9 1.0
CA A:TYR28 4.4 15.4 1.0
CA A:GLY32 4.4 34.0 1.0
CA A:GLY33 4.5 32.0 1.0
N A:LYS31 4.6 30.4 1.0
C A:CYS29 4.6 18.8 1.0
N A:CYS29 4.7 15.0 1.0
C2 A:ANN121 4.7 38.4 1.0
CA A:LYS31 4.8 34.6 1.0
CA A:CYS29 4.8 17.3 1.0
OH A:TYR64 4.9 25.6 1.0

Reference:

S.Kaushik, R.Prem Kumar, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of Group I Phospholipase A2 with 4-Methoxy-Benzoicacid at 1.4A Resolution To Be Published.
Page generated: Sat Jul 13 15:00:52 2024

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