Calcium in PDB 3nvn: Molecular Mechanism of Guidance Cue Recognition

The structure of Molecular Mechanism of Guidance Cue Recognition, PDB code: 3nvn was solved by H.Liu, Z.Juo, A.Shim, P.Focia, X.Chen, C.Garcia, X.He, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	43.53 / 2.26
Space group	C 2 2 21
Cell size a, b, c (Å), α, β, γ (°)	95.749, 133.494, 172.231, 90.00, 90.00, 90.00
R / Rfree (%)	23.9 / 27.6

The binding sites of Calcium atom in the Molecular Mechanism of Guidance Cue Recognition (pdb code 3nvn). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Molecular Mechanism of Guidance Cue Recognition, PDB code: 3nvn:

Calcium binding site 1 out of 1 in the Molecular Mechanism of Guidance Cue Recognition


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Molecular Mechanism of Guidance Cue Recognition within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca801 b:62.5 occ:1.00 OD1 B:ASP304 2.2 39.7 1.0 O B:GLU301 2.2 38.3 1.0 O B:HOH656 2.6 29.5 1.0 O B:HOH655 2.7 31.4 1.0 O B:HOH706 3.1 62.6 1.0 CG B:ASP304 3.2 41.0 1.0 O B:HOH571 3.2 44.0 1.0 C B:GLU301 3.4 37.6 1.0 OD2 B:ASP304 3.5 40.9 1.0 CA B:GLU301 4.3 39.5 1.0 N B:ALA302 4.3 31.2 1.0 CA B:ALA302 4.4 31.1 1.0 N B:ASP304 4.4 34.2 1.0 CB B:ASP304 4.4 39.4 1.0 C B:ALA302 4.5 31.4 1.0 CA B:ASP304 4.6 33.6 1.0 NE1 B:TRP240 4.6 21.0 1.0 N B:LEU303 4.7 29.7 1.0 CB B:GLU301 4.9 60.1 1.0 O B:ALA302 5.0 32.7 1.0

H.Liu, Z.S.Juo, A.H.Shim, P.J.Focia, X.Chen, K.C.Garcia, X.He. Structural Basis of Semaphorin-Plexin Recognition and Viral Mimicry From SEMA7A and A39R Complexes with PLEXINC1. Cell(Cambridge,Mass.) V. 142 749 2010.
ISSN: ISSN 0092-8674
PubMed: 20727575
DOI: 10.1016/J.CELL.2010.07.040