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Calcium in PDB 3o03: Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2

Enzymatic activity of Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2

All present enzymatic activity of Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2:
1.1.1.69;

Protein crystallography data

The structure of Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2, PDB code: 3o03 was solved by H.Peng, F.Gao, Q.Zhang, Y.Liu, G.F.Gao, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 25.87 / 1.90
Space group I 2 2 2
Cell size a, b, c (Å), α, β, γ (°) 71.244, 75.272, 98.700, 90.00, 90.00, 90.00
R / Rfree (%) 19.1 / 24.2

Calcium Binding Sites:

The binding sites of Calcium atom in the Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2 (pdb code 3o03). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2, PDB code: 3o03:

Calcium binding site 1 out of 1 in 3o03

Go back to Calcium Binding Sites List in 3o03
Calcium binding site 1 out of 1 in the Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Quaternary Complex Structure of Gluconate 5-Dehydrogenase From Streptococcus Suis Type 2 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca272

b:20.0
occ:1.00
 O A:HOH479 2.5 57.6 1.0
N A:MET151 2.8 19.5 1.0
O A:PRO193 2.8 18.8 1.0
C6 A:GCO274 2.9 64.1 1.0
OG A:SER150 3.0 19.2 1.0
C5N A:NAP273 3.4 38.6 1.0
O6 A:GCO274 3.4 62.7 1.0
O A:GLY194 3.4 24.0 1.0
CB A:MET151 3.5 21.9 1.0
CA A:SER150 3.6 18.4 1.0
C A:SER150 3.6 19.4 1.0
CA A:MET151 3.7 22.0 1.0
CB A:SER150 3.8 18.4 1.0
C4N A:NAP273 3.9 39.1 1.0
O4 A:GCO274 3.9 66.0 1.0
CE A:MET151 3.9 23.1 1.0
CG A:MET151 4.0 23.5 1.0
C A:PRO193 4.0 19.7 1.0
C5 A:GCO274 4.0 65.2 1.0
CE A:MET152 4.0 36.6 1.0
C A:GLY194 4.2 23.5 1.0
C4 A:GCO274 4.4 65.8 1.0
N A:MET152 4.4 20.6 1.0
C6N A:NAP273 4.5 36.9 1.0
CA A:GLY194 4.5 21.6 1.0
C A:MET151 4.6 20.3 1.0
N A:GLY194 4.7 20.6 1.0
O A:HOH477 4.7 38.0 1.0
SD A:MET151 4.7 31.2 1.0
O A:SER150 4.9 19.0 1.0
CA A:PRO193 5.0 19.6 1.0

Reference:

Q.Zhang, H.Peng, F.Gao, Y.Liu, H.Cheng, J.Thompson, G.F.Gao. Structural Insight Into the Catalytic Mechanism of Gluconate 5-Dehydrogenase From Streptococcus Suis: Crystal Structures of the Substrate-Free and Quaternary Complex Enzymes. Protein Sci. V. 18 294 2009.
ISSN: ISSN 0961-8368
PubMed: 19177572
DOI: 10.1002/PRO.32
Page generated: Sat Jul 13 15:11:16 2024

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