Calcium in PDB 3o4y: Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610

The structure of Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610, PDB code: 3o4y was solved by A.K.Wernimont, A.Hutchinson, H.Sullivan, J.Weadge, A.Bochkarev, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, R.Hui, M.Amani, Structural Genomics Consortium (Sgc), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	35.00 / 2.20
Space group	I 2 2 2
Cell size a, b, c (Å), α, β, γ (°)	52.106, 84.858, 85.757, 90.00, 90.00, 90.00
R / Rfree (%)	23.5 / 27.5

The binding sites of Calcium atom in the Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610 (pdb code 3o4y). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610, PDB code: 3o4y:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in the Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca197 b:24.4 occ:1.00 OE2 A:GLU146 2.1 6.0 0.8 O A:HOH201 2.2 12.9 1.0 OE2 A:GLU146 2.2 7.1 0.2 O A:GLU141 2.3 8.2 1.0 OD1 A:ASP139 2.3 10.7 1.0 OD1 A:ASP135 2.3 7.7 1.0 OD1 A:ASP137 2.5 7.8 0.5 OD1 A:ASP137 2.5 8.6 0.5 CD A:GLU146 2.8 7.2 0.8 OE1 A:GLU146 2.8 7.8 0.8 CG A:ASP139 2.9 8.6 1.0 OD2 A:ASP139 3.2 11.4 1.0 CG A:ASP137 3.3 7.7 0.5 CD A:GLU146 3.4 7.1 0.2 C A:GLU141 3.4 7.3 1.0 CG A:ASP135 3.5 7.0 1.0 CG A:ASP137 3.5 7.5 0.5 OD2 A:ASP137 3.8 7.8 0.5 N A:GLU141 3.8 7.2 1.0 OD2 A:ASP137 3.9 7.4 0.5 N A:ASP139 3.9 7.4 1.0 OE1 A:GLU146 4.0 6.8 0.2 CB A:ASP139 4.0 7.2 1.0 CA A:GLU141 4.1 7.0 1.0 CB A:GLU141 4.2 6.7 1.0 OD2 A:ASP135 4.3 6.3 1.0 CG A:GLU146 4.3 6.4 0.8 CA A:ASP139 4.4 7.2 1.0 N A:GLY140 4.4 6.8 1.0 CA A:ASP135 4.4 7.1 1.0 CB A:ASP135 4.4 6.9 1.0 CG A:GLU146 4.5 6.6 0.2 CB A:ASP137 4.5 7.2 0.5 N A:ILE142 4.5 7.4 1.0 O A:HOH230 4.5 6.8 1.0 N A:ASN138 4.5 7.2 1.0 N A:ASP137 4.6 7.0 0.5 C A:ASP139 4.6 7.2 1.0 N A:ASP137 4.6 7.0 0.5 CG2 A:THR143 4.6 6.9 1.0 C A:ASP135 4.7 7.2 1.0 CA A:ILE142 4.7 7.2 1.0 CB A:ASP137 4.8 7.2 0.5 N A:THR143 4.8 7.5 1.0 CA A:ASP137 4.9 7.2 0.5 C A:ASP137 4.9 7.2 0.5 C A:ASP137 4.9 7.2 0.5 N A:VAL136 4.9 7.0 1.0 C A:GLY140 5.0 7.0 1.0

Calcium binding site 2 out of 2 in the Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca198 b:22.6 occ:1.00 O A:LYS182 2.2 7.8 1.0 OD1 A:ASN178 2.2 6.5 1.0 OD1 A:ASP180 2.3 7.5 1.0 OD1 A:ASP176 2.3 7.3 1.0 OE1 A:GLU187 2.4 4.2 1.0 OE2 A:GLU187 2.4 5.1 1.0 O A:HOH202 2.6 2.8 1.0 CD A:GLU187 2.8 5.8 1.0 CG A:ASP180 3.2 7.5 1.0 CG A:ASN178 3.3 6.8 1.0 C A:LYS182 3.4 7.2 1.0 CG A:ASP176 3.4 7.0 1.0 OD2 A:ASP180 3.6 8.9 1.0 ND2 A:ASN178 3.9 5.9 1.0 OD2 A:ASP176 4.1 5.2 1.0 N A:LYS182 4.2 6.8 1.0 N A:ASN178 4.3 7.0 1.0 N A:ASP180 4.3 6.7 1.0 N A:ILE183 4.3 7.0 1.0 CB A:ASP176 4.3 7.0 1.0 CA A:ASP176 4.3 7.0 1.0 CA A:LYS182 4.3 6.8 1.0 CG A:GLU187 4.4 5.6 1.0 CA A:ILE183 4.4 7.1 1.0 N A:ASP184 4.4 7.0 1.0 CB A:ASP180 4.5 6.8 1.0 C A:ASP176 4.5 6.9 1.0 CB A:ASN178 4.5 6.7 1.0 OD2 A:ASP184 4.5 8.5 1.0 O A:HOH206 4.5 13.7 1.0 N A:GLY179 4.6 6.7 1.0 N A:LYS177 4.6 6.8 1.0 CA A:ASN178 4.7 6.9 1.0 CG A:ASP184 4.8 7.8 1.0 CA A:ASP180 4.8 6.9 1.0 C A:ASN178 4.8 6.8 1.0 N A:GLY181 4.9 6.9 1.0 CB A:LYS182 4.9 6.5 1.0 C A:ILE183 4.9 7.1 1.0 O A:ASP176 5.0 7.1 1.0

A.K.Wernimont, A.Hutchinson, H.Sullivan, J.Weadge, A.Bochkarev, C.H.Arrowsmith, A.M.Edwards, C.Bountra, J.Weigelt, R.Hui, M.Amani. Crystal Structure of Cad Domain of the Plasmodium Vivax Cdpk, PVX_11610 To Be Published.