Calcium in PDB 3opu: Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
Protein crystallography data
The structure of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap, PDB code: 3opu
was solved by
A.Nylander,
K.Persson,
with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:
|
Resolution Low / High (Å)
|
29.01 /
2.18
|
|
Space group
|
P 21 21 2
|
|
Cell size a, b, c (Å), α, β, γ (°)
|
135.775,
238.391,
78.493,
90.00,
90.00,
90.00
|
|
R / Rfree (%)
|
21 /
24.8
|
Calcium Binding Sites:
Pages:
>>> Page 1 <<<
Page 2, Binding sites: 11 -
12;
Binding sites:
The binding sites of Calcium atom in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
(pdb code 3opu). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 12 binding sites of Calcium where determined in the
Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap, PDB code: 3opu:
Jump to Calcium binding site number:
1;
2;
3;
4;
5;
6;
7;
8;
9;
10;
Calcium binding site 1 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 1 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca4
b:27.3
occ:0.80
|
O
|
A:TYR1209
|
2.3
|
10.5
|
1.0
|
|
O
|
A:ALA1263
|
2.3
|
14.0
|
1.0
|
|
O
|
A:LYS1261
|
2.4
|
21.9
|
1.0
|
|
OD1
|
A:ASP1208
|
2.5
|
16.8
|
1.0
|
|
O
|
A:HOH365
|
2.9
|
19.4
|
1.0
|
|
OE1
|
A:GLU1211
|
2.9
|
17.3
|
1.0
|
|
C
|
A:TYR1209
|
3.3
|
12.2
|
1.0
|
|
N
|
A:ALA1263
|
3.4
|
15.0
|
1.0
|
|
C
|
A:ALA1263
|
3.4
|
17.9
|
1.0
|
|
O
|
A:HOH512
|
3.6
|
27.8
|
1.0
|
|
N
|
A:TYR1209
|
3.6
|
14.4
|
1.0
|
|
C
|
A:LYS1261
|
3.7
|
22.3
|
1.0
|
|
CG
|
A:ASP1208
|
3.7
|
18.4
|
1.0
|
|
C
|
A:ASP1208
|
3.9
|
15.1
|
1.0
|
|
CA
|
A:ALA1263
|
3.9
|
14.3
|
1.0
|
|
C
|
A:GLY1262
|
4.0
|
20.9
|
1.0
|
|
CA
|
A:TYR1209
|
4.0
|
11.9
|
1.0
|
|
CD
|
A:GLU1211
|
4.1
|
20.2
|
1.0
|
|
N
|
A:PRO1210
|
4.3
|
11.1
|
1.0
|
|
CA
|
A:GLY1262
|
4.3
|
18.2
|
1.0
|
|
CA
|
A:PRO1210
|
4.3
|
11.3
|
1.0
|
|
CA
|
A:ASP1208
|
4.3
|
12.9
|
1.0
|
|
N
|
A:GLU1211
|
4.4
|
13.1
|
1.0
|
|
O
|
A:ASP1208
|
4.4
|
15.0
|
1.0
|
|
N
|
A:GLY1262
|
4.5
|
16.3
|
1.0
|
|
OD2
|
A:ASP1208
|
4.5
|
16.5
|
1.0
|
|
N
|
A:PHE1264
|
4.6
|
12.7
|
1.0
|
|
CB
|
A:ALA1263
|
4.6
|
17.1
|
1.0
|
|
CB
|
A:ASP1208
|
4.6
|
15.1
|
1.0
|
|
CA
|
A:LYS1261
|
4.7
|
20.2
|
1.0
|
|
O
|
A:GLY1262
|
4.7
|
18.3
|
1.0
|
|
N
|
A:LYS1261
|
4.7
|
20.9
|
1.0
|
|
OE2
|
A:GLU1211
|
4.8
|
29.1
|
1.0
|
|
C
|
A:PRO1210
|
4.9
|
14.3
|
1.0
|
|
CB
|
A:LYS1261
|
4.9
|
19.7
|
1.0
|
|
CA
|
A:PHE1264
|
4.9
|
11.7
|
1.0
|
|
CG
|
A:TYR1209
|
4.9
|
14.8
|
1.0
|
|
Calcium binding site 2 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 2 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca9
b:33.5
occ:0.80
|
OD1
|
A:ASP1384
|
2.4
|
23.2
|
1.0
|
|
O
|
A:TYR1385
|
2.5
|
18.8
|
1.0
|
|
O
|
A:LYS1430
|
2.6
|
21.5
|
1.0
|
|
OE1
|
A:GLN1387
|
2.6
|
26.9
|
1.0
|
|
O
|
A:GLY1431
|
2.7
|
20.8
|
1.0
|
|
O
|
A:HOH473
|
2.7
|
26.7
|
1.0
|
|
C
|
A:GLY1431
|
3.3
|
21.8
|
1.0
|
|
CA
|
A:GLY1431
|
3.4
|
19.3
|
1.0
|
|
C
|
A:LYS1430
|
3.6
|
25.7
|
1.0
|
|
CD
|
A:GLN1387
|
3.6
|
28.5
|
1.0
|
|
CG
|
A:ASP1384
|
3.6
|
29.5
|
1.0
|
|
C
|
A:TYR1385
|
3.6
|
20.7
|
1.0
|
|
N
|
A:TYR1385
|
3.8
|
19.7
|
1.0
|
|
N
|
A:GLY1431
|
3.9
|
20.9
|
1.0
|
|
NE2
|
A:GLN1387
|
4.0
|
23.9
|
1.0
|
|
C
|
A:ASP1384
|
4.1
|
20.7
|
1.0
|
|
CA
|
A:ASP1384
|
4.4
|
21.7
|
1.0
|
|
CA
|
A:TYR1385
|
4.4
|
19.5
|
1.0
|
|
OD2
|
A:ASP1384
|
4.4
|
28.1
|
1.0
|
|
N
|
A:ALA1432
|
4.4
|
20.0
|
1.0
|
|
N
|
A:GLN1387
|
4.4
|
21.4
|
1.0
|
|
CB
|
A:ASP1384
|
4.6
|
25.8
|
1.0
|
|
N
|
A:ASP1386
|
4.6
|
24.1
|
1.0
|
|
O
|
A:ASP1384
|
4.7
|
21.7
|
1.0
|
|
CA
|
A:ASP1386
|
4.8
|
20.7
|
1.0
|
|
CG
|
A:GLN1387
|
4.9
|
27.4
|
1.0
|
|
CA
|
A:LYS1430
|
4.9
|
25.1
|
1.0
|
|
CG
|
A:LYS1430
|
4.9
|
26.3
|
1.0
|
|
CB
|
A:GLN1387
|
5.0
|
27.5
|
1.0
|
|
CD1
|
A:TYR1385
|
5.0
|
19.0
|
1.0
|
|
CG
|
A:TYR1385
|
5.0
|
16.6
|
1.0
|
|
Calcium binding site 3 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 3 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 3 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca5
b:26.1
occ:0.80
|
O
|
B:ALA1263
|
2.2
|
13.4
|
1.0
|
|
O
|
B:TYR1209
|
2.3
|
14.2
|
1.0
|
|
O
|
B:LYS1261
|
2.4
|
18.7
|
1.0
|
|
OD1
|
B:ASP1208
|
2.4
|
18.9
|
1.0
|
|
OE1
|
B:GLU1211
|
3.0
|
20.0
|
1.0
|
|
O
|
B:HOH411
|
3.0
|
22.4
|
1.0
|
|
N
|
B:ALA1263
|
3.3
|
13.5
|
1.0
|
|
C
|
B:ALA1263
|
3.3
|
15.0
|
1.0
|
|
C
|
B:TYR1209
|
3.4
|
17.5
|
1.0
|
|
N
|
B:TYR1209
|
3.5
|
12.2
|
1.0
|
|
C
|
B:LYS1261
|
3.6
|
22.0
|
1.0
|
|
O
|
B:HOH412
|
3.6
|
30.2
|
1.0
|
|
CG
|
B:ASP1208
|
3.7
|
20.5
|
1.0
|
|
C
|
B:GLY1262
|
3.8
|
15.4
|
1.0
|
|
CA
|
B:ALA1263
|
3.9
|
10.6
|
1.0
|
|
C
|
B:ASP1208
|
3.9
|
13.2
|
1.0
|
|
CA
|
B:TYR1209
|
4.1
|
15.2
|
1.0
|
|
CA
|
B:GLY1262
|
4.2
|
17.0
|
1.0
|
|
CD
|
B:GLU1211
|
4.3
|
19.2
|
1.0
|
|
CA
|
B:ASP1208
|
4.3
|
11.5
|
1.0
|
|
N
|
B:GLY1262
|
4.4
|
19.3
|
1.0
|
|
OD2
|
B:ASP1208
|
4.4
|
15.4
|
1.0
|
|
N
|
B:PRO1210
|
4.4
|
18.4
|
1.0
|
|
N
|
B:PHE1264
|
4.5
|
9.3
|
1.0
|
|
N
|
B:GLU1211
|
4.5
|
14.5
|
1.0
|
|
O
|
B:GLY1262
|
4.5
|
14.6
|
1.0
|
|
CB
|
B:ALA1263
|
4.5
|
13.9
|
1.0
|
|
CA
|
B:PRO1210
|
4.6
|
12.6
|
1.0
|
|
N
|
B:LYS1261
|
4.6
|
19.0
|
1.0
|
|
CB
|
B:ASP1208
|
4.6
|
14.7
|
1.0
|
|
CA
|
B:LYS1261
|
4.6
|
19.3
|
1.0
|
|
O
|
B:ASP1208
|
4.6
|
14.0
|
1.0
|
|
O
|
B:HOH262
|
4.7
|
21.8
|
1.0
|
|
CA
|
B:PHE1264
|
4.8
|
11.5
|
1.0
|
|
CB
|
B:LYS1261
|
4.9
|
21.3
|
1.0
|
|
CG
|
B:TYR1209
|
4.9
|
14.5
|
1.0
|
|
CB
|
B:PHE1264
|
4.9
|
10.5
|
1.0
|
|
OE2
|
B:GLU1211
|
5.0
|
28.8
|
1.0
|
|
CD2
|
B:TYR1209
|
5.0
|
12.8
|
1.0
|
|
Calcium binding site 4 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 4 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 4 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
B:Ca1
b:29.4
occ:0.80
|
O
|
B:TYR1385
|
2.4
|
19.2
|
1.0
|
|
OD1
|
B:ASP1384
|
2.4
|
20.5
|
1.0
|
|
O
|
B:LYS1430
|
2.4
|
14.8
|
1.0
|
|
OE1
|
B:GLN1387
|
2.5
|
24.0
|
1.0
|
|
O
|
B:HOH326
|
2.6
|
23.8
|
1.0
|
|
O
|
B:GLY1431
|
2.6
|
15.5
|
1.0
|
|
C
|
B:GLY1431
|
3.3
|
17.4
|
1.0
|
|
CA
|
B:GLY1431
|
3.4
|
15.5
|
1.0
|
|
C
|
B:LYS1430
|
3.5
|
17.4
|
1.0
|
|
CD
|
B:GLN1387
|
3.5
|
26.5
|
1.0
|
|
C
|
B:TYR1385
|
3.6
|
18.4
|
1.0
|
|
CG
|
B:ASP1384
|
3.6
|
23.6
|
1.0
|
|
N
|
B:TYR1385
|
3.9
|
17.0
|
1.0
|
|
N
|
B:GLY1431
|
3.9
|
16.8
|
1.0
|
|
NE2
|
B:GLN1387
|
3.9
|
18.0
|
1.0
|
|
O
|
B:HOH321
|
4.1
|
22.3
|
1.0
|
|
C
|
B:ASP1384
|
4.2
|
18.2
|
1.0
|
|
OD2
|
B:ASP1384
|
4.3
|
26.8
|
1.0
|
|
N
|
B:GLN1387
|
4.3
|
17.3
|
1.0
|
|
CA
|
B:TYR1385
|
4.4
|
16.1
|
1.0
|
|
N
|
B:ALA1432
|
4.5
|
14.1
|
1.0
|
|
CA
|
B:ASP1384
|
4.5
|
19.6
|
1.0
|
|
N
|
B:ASP1386
|
4.6
|
18.1
|
1.0
|
|
CA
|
B:ASP1386
|
4.6
|
19.3
|
1.0
|
|
CB
|
B:ASP1384
|
4.7
|
17.6
|
1.0
|
|
O
|
B:ASP1384
|
4.7
|
17.4
|
1.0
|
|
CG
|
B:GLN1387
|
4.8
|
20.8
|
1.0
|
|
CG
|
B:LYS1430
|
4.8
|
22.3
|
1.0
|
|
CA
|
B:LYS1430
|
4.8
|
16.1
|
1.0
|
|
O
|
B:HOH253
|
4.8
|
29.0
|
1.0
|
|
CB
|
B:GLN1387
|
4.9
|
17.6
|
1.0
|
|
CG
|
B:TYR1385
|
4.9
|
16.6
|
1.0
|
|
CD1
|
B:TYR1385
|
5.0
|
16.6
|
1.0
|
|
Calcium binding site 5 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 5 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 5 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca6
b:28.7
occ:0.80
|
O
|
C:TYR1209
|
2.4
|
17.8
|
1.0
|
|
O
|
C:ALA1263
|
2.4
|
18.4
|
1.0
|
|
O
|
C:LYS1261
|
2.4
|
29.1
|
1.0
|
|
OD1
|
C:ASP1208
|
2.5
|
20.9
|
1.0
|
|
O
|
C:HOH276
|
2.9
|
24.1
|
1.0
|
|
OE1
|
C:GLU1211
|
3.0
|
22.2
|
1.0
|
|
C
|
C:TYR1209
|
3.4
|
21.3
|
1.0
|
|
C
|
C:ALA1263
|
3.5
|
14.6
|
1.0
|
|
N
|
C:ALA1263
|
3.5
|
19.6
|
1.0
|
|
C
|
C:LYS1261
|
3.6
|
27.2
|
1.0
|
|
N
|
C:TYR1209
|
3.7
|
17.2
|
1.0
|
|
CG
|
C:ASP1208
|
3.7
|
27.2
|
1.0
|
|
C
|
C:GLY1262
|
3.9
|
27.0
|
1.0
|
|
C
|
C:ASP1208
|
4.0
|
18.5
|
1.0
|
|
CA
|
C:ALA1263
|
4.0
|
19.4
|
1.0
|
|
CD
|
C:GLU1211
|
4.2
|
24.4
|
1.0
|
|
CA
|
C:TYR1209
|
4.2
|
16.9
|
1.0
|
|
CA
|
C:GLY1262
|
4.3
|
22.2
|
1.0
|
|
CA
|
C:ASP1208
|
4.4
|
17.2
|
1.0
|
|
N
|
C:PRO1210
|
4.4
|
16.9
|
1.0
|
|
N
|
C:GLY1262
|
4.4
|
26.6
|
1.0
|
|
OD2
|
C:ASP1208
|
4.4
|
32.8
|
1.0
|
|
O
|
C:ASP1208
|
4.5
|
17.6
|
1.0
|
|
N
|
C:GLU1211
|
4.5
|
21.5
|
1.0
|
|
CA
|
C:PRO1210
|
4.5
|
17.5
|
1.0
|
|
CA
|
C:LYS1261
|
4.6
|
30.4
|
1.0
|
|
N
|
C:PHE1264
|
4.6
|
12.9
|
1.0
|
|
O
|
C:GLY1262
|
4.6
|
24.9
|
1.0
|
|
N
|
C:LYS1261
|
4.6
|
27.4
|
1.0
|
|
CB
|
C:ASP1208
|
4.7
|
18.7
|
1.0
|
|
CB
|
C:ALA1263
|
4.7
|
17.1
|
1.0
|
|
CB
|
C:LYS1261
|
4.8
|
33.2
|
1.0
|
|
OE2
|
C:GLU1211
|
4.8
|
32.8
|
1.0
|
|
O
|
C:HOH36
|
4.8
|
21.2
|
1.0
|
|
CA
|
C:PHE1264
|
4.9
|
13.0
|
1.0
|
|
Calcium binding site 6 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 6 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 6 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
C:Ca1
b:52.3
occ:0.80
|
O
|
C:LYS1430
|
2.7
|
40.2
|
1.0
|
|
NE2
|
C:GLN1387
|
2.7
|
61.7
|
1.0
|
|
O
|
C:TYR1385
|
2.7
|
34.0
|
1.0
|
|
O
|
C:GLY1431
|
2.8
|
40.5
|
1.0
|
|
OD1
|
C:ASP1384
|
3.1
|
43.8
|
1.0
|
|
CA
|
C:GLY1431
|
3.3
|
41.6
|
1.0
|
|
C
|
C:GLY1431
|
3.3
|
45.0
|
1.0
|
|
CB
|
C:GLN1387
|
3.6
|
51.9
|
1.0
|
|
CD
|
C:GLN1387
|
3.6
|
58.0
|
1.0
|
|
C
|
C:LYS1430
|
3.6
|
43.4
|
1.0
|
|
CG
|
C:GLN1387
|
3.7
|
54.6
|
1.0
|
|
N
|
C:GLN1387
|
3.8
|
43.1
|
1.0
|
|
C
|
C:TYR1385
|
3.9
|
40.9
|
1.0
|
|
N
|
C:GLY1431
|
3.9
|
42.9
|
1.0
|
|
CA
|
C:GLN1387
|
4.3
|
48.6
|
1.0
|
|
N
|
C:TYR1385
|
4.3
|
34.0
|
1.0
|
|
CG
|
C:ASP1384
|
4.3
|
44.1
|
1.0
|
|
N
|
C:ALA1432
|
4.5
|
38.2
|
1.0
|
|
OE1
|
C:GLN1387
|
4.7
|
60.0
|
1.0
|
|
CA
|
C:TYR1385
|
4.7
|
40.3
|
1.0
|
|
C
|
C:ASP1384
|
4.7
|
36.9
|
1.0
|
|
C
|
C:ASP1386
|
4.8
|
45.2
|
1.0
|
|
N
|
C:ASP1386
|
4.8
|
41.7
|
1.0
|
|
CA
|
C:ASP1386
|
4.9
|
49.4
|
1.0
|
|
OD2
|
C:ASP1384
|
5.0
|
43.6
|
1.0
|
|
Calcium binding site 7 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 7 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 7 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca1
b:46.5
occ:0.80
|
O
|
D:TYR1385
|
2.4
|
28.3
|
1.0
|
|
O
|
D:LYS1430
|
2.6
|
31.2
|
1.0
|
|
OD1
|
D:ASP1384
|
2.6
|
26.4
|
1.0
|
|
OE1
|
D:GLN1387
|
2.7
|
42.2
|
1.0
|
|
O
|
D:GLY1431
|
2.8
|
31.8
|
1.0
|
|
C
|
D:GLY1431
|
3.3
|
35.3
|
1.0
|
|
CA
|
D:GLY1431
|
3.4
|
30.9
|
1.0
|
|
CD
|
D:GLN1387
|
3.5
|
41.5
|
1.0
|
|
C
|
D:LYS1430
|
3.6
|
32.8
|
1.0
|
|
C
|
D:TYR1385
|
3.7
|
37.0
|
1.0
|
|
NE2
|
D:GLN1387
|
3.7
|
45.4
|
1.0
|
|
CG
|
D:ASP1384
|
3.8
|
35.6
|
1.0
|
|
N
|
D:GLY1431
|
3.9
|
29.7
|
1.0
|
|
N
|
D:TYR1385
|
4.1
|
29.6
|
1.0
|
|
C
|
D:ASP1384
|
4.3
|
28.7
|
1.0
|
|
N
|
D:GLN1387
|
4.4
|
38.5
|
1.0
|
|
N
|
D:ALA1432
|
4.4
|
34.0
|
1.0
|
|
OD2
|
D:ASP1384
|
4.4
|
36.3
|
1.0
|
|
CA
|
D:TYR1385
|
4.5
|
30.4
|
1.0
|
|
N
|
D:ASP1386
|
4.6
|
32.3
|
1.0
|
|
CA
|
D:ASP1386
|
4.6
|
37.5
|
1.0
|
|
CA
|
D:ASP1384
|
4.7
|
25.5
|
1.0
|
|
O
|
D:ASP1384
|
4.7
|
29.8
|
1.0
|
|
CG
|
D:GLN1387
|
4.8
|
41.6
|
1.0
|
|
CB
|
D:ASP1384
|
4.9
|
29.3
|
1.0
|
|
CA
|
D:LYS1430
|
5.0
|
33.6
|
1.0
|
|
Calcium binding site 8 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 8 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 8 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
D:Ca7
b:25.8
occ:0.80
|
O
|
D:ALA1263
|
2.3
|
15.2
|
1.0
|
|
O
|
D:LYS1261
|
2.4
|
24.3
|
1.0
|
|
O
|
D:TYR1209
|
2.4
|
13.3
|
1.0
|
|
OD1
|
D:ASP1208
|
2.5
|
21.1
|
1.0
|
|
O
|
D:HOH346
|
2.9
|
20.5
|
1.0
|
|
OE1
|
D:GLU1211
|
3.0
|
25.3
|
1.0
|
|
C
|
D:ALA1263
|
3.4
|
17.7
|
1.0
|
|
N
|
D:ALA1263
|
3.4
|
17.0
|
1.0
|
|
C
|
D:TYR1209
|
3.5
|
15.6
|
1.0
|
|
O
|
D:HOH484
|
3.5
|
32.0
|
1.0
|
|
N
|
D:TYR1209
|
3.6
|
11.2
|
1.0
|
|
C
|
D:LYS1261
|
3.6
|
25.4
|
1.0
|
|
CG
|
D:ASP1208
|
3.7
|
22.5
|
1.0
|
|
C
|
D:ASP1208
|
3.9
|
14.4
|
1.0
|
|
C
|
D:GLY1262
|
3.9
|
21.3
|
1.0
|
|
CA
|
D:ALA1263
|
4.0
|
16.4
|
1.0
|
|
CA
|
D:TYR1209
|
4.1
|
13.0
|
1.0
|
|
CD
|
D:GLU1211
|
4.2
|
23.4
|
1.0
|
|
CA
|
D:GLY1262
|
4.3
|
19.8
|
1.0
|
|
CA
|
D:ASP1208
|
4.3
|
14.2
|
1.0
|
|
N
|
D:GLY1262
|
4.4
|
23.6
|
1.0
|
|
OD2
|
D:ASP1208
|
4.4
|
21.8
|
1.0
|
|
N
|
D:PRO1210
|
4.5
|
13.5
|
1.0
|
|
O
|
D:HOH368
|
4.5
|
20.7
|
1.0
|
|
O
|
D:ASP1208
|
4.5
|
14.2
|
1.0
|
|
CA
|
D:PRO1210
|
4.5
|
12.3
|
1.0
|
|
N
|
D:GLU1211
|
4.5
|
14.9
|
1.0
|
|
O
|
D:GLY1262
|
4.5
|
17.7
|
1.0
|
|
N
|
D:PHE1264
|
4.5
|
14.1
|
1.0
|
|
CA
|
D:LYS1261
|
4.6
|
23.6
|
1.0
|
|
N
|
D:LYS1261
|
4.6
|
25.2
|
1.0
|
|
CB
|
D:ASP1208
|
4.6
|
17.1
|
1.0
|
|
CB
|
D:LYS1261
|
4.7
|
25.8
|
1.0
|
|
CB
|
D:ALA1263
|
4.8
|
15.8
|
1.0
|
|
OE2
|
D:GLU1211
|
4.9
|
33.7
|
1.0
|
|
CA
|
D:PHE1264
|
4.9
|
12.3
|
1.0
|
|
Calcium binding site 9 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 9 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 9 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca2
b:41.2
occ:0.80
|
O
|
E:LYS1430
|
2.4
|
21.6
|
1.0
|
|
OD1
|
E:ASP1384
|
2.5
|
26.2
|
1.0
|
|
OE1
|
E:GLN1387
|
2.5
|
32.1
|
1.0
|
|
O
|
E:TYR1385
|
2.6
|
24.8
|
1.0
|
|
O
|
E:GLY1431
|
2.7
|
26.3
|
1.0
|
|
C
|
E:GLY1431
|
3.3
|
26.8
|
1.0
|
|
CA
|
E:GLY1431
|
3.4
|
26.7
|
1.0
|
|
CD
|
E:GLN1387
|
3.4
|
30.3
|
1.0
|
|
C
|
E:LYS1430
|
3.5
|
24.4
|
1.0
|
|
CG
|
E:ASP1384
|
3.7
|
30.5
|
1.0
|
|
NE2
|
E:GLN1387
|
3.8
|
30.4
|
1.0
|
|
C
|
E:TYR1385
|
3.8
|
26.3
|
1.0
|
|
N
|
E:GLY1431
|
3.9
|
26.2
|
1.0
|
|
N
|
E:TYR1385
|
4.1
|
24.0
|
1.0
|
|
C
|
E:ASP1384
|
4.3
|
22.7
|
1.0
|
|
OD2
|
E:ASP1384
|
4.4
|
27.6
|
1.0
|
|
N
|
E:GLN1387
|
4.4
|
26.3
|
1.0
|
|
N
|
E:ALA1432
|
4.5
|
29.5
|
1.0
|
|
CA
|
E:ASP1384
|
4.6
|
23.4
|
1.0
|
|
CA
|
E:TYR1385
|
4.6
|
24.3
|
1.0
|
|
N
|
E:ASP1386
|
4.7
|
26.9
|
1.0
|
|
CB
|
E:ASP1384
|
4.8
|
26.4
|
1.0
|
|
O
|
E:ASP1384
|
4.8
|
24.9
|
1.0
|
|
CG
|
E:GLN1387
|
4.8
|
25.3
|
1.0
|
|
CA
|
E:ASP1386
|
4.8
|
29.4
|
1.0
|
|
CA
|
E:LYS1430
|
4.8
|
21.3
|
1.0
|
|
CB
|
E:GLN1387
|
4.9
|
27.9
|
1.0
|
|
Calcium binding site 10 out
of 12 in 3opu
Go back to
Calcium Binding Sites List in 3opu
Calcium binding site 10 out
of 12 in the Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap
 Mono view
 Stereo pair view
|
|
A full contact list of Calcium with other atoms in the Ca binding
site number 10 of Crystal Structure of the C-Terminal Domain of Streptococcus Mutans Surface Protein Spap within 5.0Å range:
|
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
E:Ca8
b:25.9
occ:0.80
|
O
|
E:TYR1209
|
2.3
|
13.9
|
1.0
|
|
O
|
E:LYS1261
|
2.4
|
22.7
|
1.0
|
|
OD1
|
E:ASP1208
|
2.4
|
17.9
|
1.0
|
|
O
|
E:ALA1263
|
2.5
|
11.9
|
1.0
|
|
O
|
E:HOH539
|
2.9
|
24.1
|
1.0
|
|
OE1
|
E:GLU1211
|
3.0
|
18.8
|
1.0
|
|
C
|
E:TYR1209
|
3.4
|
14.6
|
1.0
|
|
N
|
E:ALA1263
|
3.5
|
16.5
|
1.0
|
|
C
|
E:ALA1263
|
3.6
|
13.8
|
1.0
|
|
C
|
E:LYS1261
|
3.6
|
22.9
|
1.0
|
|
N
|
E:TYR1209
|
3.6
|
13.8
|
1.0
|
|
CG
|
E:ASP1208
|
3.7
|
22.4
|
1.0
|
|
C
|
E:ASP1208
|
3.9
|
15.5
|
1.0
|
|
C
|
E:GLY1262
|
4.0
|
17.6
|
1.0
|
|
CA
|
E:TYR1209
|
4.1
|
13.2
|
1.0
|
|
CA
|
E:ALA1263
|
4.1
|
14.1
|
1.0
|
|
CD
|
E:GLU1211
|
4.2
|
20.2
|
1.0
|
|
CA
|
E:GLY1262
|
4.3
|
19.6
|
1.0
|
|
CA
|
E:ASP1208
|
4.3
|
16.2
|
1.0
|
|
N
|
E:PRO1210
|
4.3
|
13.5
|
1.0
|
|
N
|
E:GLU1211
|
4.4
|
16.5
|
1.0
|
|
O
|
E:HOH301
|
4.4
|
21.3
|
1.0
|
|
N
|
E:GLY1262
|
4.4
|
17.4
|
1.0
|
|
OD2
|
E:ASP1208
|
4.4
|
24.4
|
1.0
|
|
O
|
E:ASP1208
|
4.5
|
14.6
|
1.0
|
|
CA
|
E:PRO1210
|
4.5
|
13.0
|
1.0
|
|
CA
|
E:LYS1261
|
4.5
|
24.9
|
1.0
|
|
N
|
E:LYS1261
|
4.6
|
21.9
|
1.0
|
|
CB
|
E:ASP1208
|
4.6
|
17.9
|
1.0
|
|
CB
|
E:LYS1261
|
4.7
|
22.0
|
1.0
|
|
N
|
E:PHE1264
|
4.7
|
13.8
|
1.0
|
|
O
|
E:GLY1262
|
4.8
|
20.1
|
1.0
|
|
CB
|
E:ALA1263
|
4.8
|
16.5
|
1.0
|
|
OE2
|
E:GLU1211
|
4.9
|
24.6
|
1.0
|
|
C
|
E:PRO1210
|
5.0
|
15.4
|
1.0
|
|
CA
|
E:PHE1264
|
5.0
|
12.2
|
1.0
|
|
Reference:
A.Nylander,
N.Forsgren,
K.Persson.
Structure of the C-Terminal Domain of the Surface Antigen Spap From the Caries Pathogen Streptococcus Mutans. Acta Crystallogr.,Sect.F V. 67 23 2011.
ISSN: ESSN 1744-3091
PubMed: 21206016
DOI: 10.1107/S174430911004443X
Page generated: Sat Jul 13 16:20:07 2024
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