Calcium in PDB 3oqq: Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution

The structure of Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution, PDB code: 3oqq was solved by Joint Center For Structural Genomics (Jcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	25.75 / 2.08
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	88.640, 118.580, 49.330, 90.00, 110.41, 90.00
R / Rfree (%)	16.1 / 20.4

The binding sites of Calcium atom in the Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution (pdb code 3oqq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution, PDB code: 3oqq:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca457 b:21.7 occ:1.00 O A:GLY207 2.4 19.4 1.0 OD1 A:ASN169 2.4 16.6 1.0 OE1 A:GLU418 2.4 25.4 1.0 OD2 A:ASP167 2.4 24.2 1.0 OD1 A:ASP170 2.5 23.9 1.0 OE2 A:GLU418 2.5 22.5 1.0 O A:HOH508 2.7 18.1 1.0 OD1 A:ASP167 2.7 19.4 1.0 CD A:GLU418 2.8 28.3 1.0 CG A:ASP167 2.9 22.3 1.0 C A:GLY207 3.4 22.2 1.0 CG A:ASN169 3.5 28.6 1.0 CA A:CA458 3.7 20.7 1.0 CG A:ASP170 3.7 25.9 1.0 CA A:GLY207 3.8 18.4 1.0 ND2 A:ASN169 3.9 13.8 1.0 N A:ASP170 4.2 18.6 1.0 O A:HOH569 4.2 22.2 1.0 CG A:GLU418 4.3 25.2 1.0 O A:HOH617 4.3 33.8 1.0 CA A:ASP170 4.3 17.9 1.0 CB A:ASP167 4.4 20.7 1.0 C A:ASN169 4.4 20.8 1.0 OD2 A:ASP170 4.5 24.6 1.0 N A:GLY208 4.5 21.1 1.0 CB A:ASP170 4.7 19.9 1.0 N A:ASN169 4.7 17.9 1.0 CB A:ASN169 4.8 14.9 1.0 O A:ASN169 4.8 18.8 1.0 O A:HOH727 4.8 25.3 1.0 N A:ARG419 4.9 21.4 1.0 CA A:ASN169 4.9 17.6 1.0 CA A:GLU418 4.9 20.4 1.0 OE2 A:GLU153 4.9 19.5 1.0 N A:GLY207 5.0 17.6 1.0 CA A:GLY208 5.0 20.2 1.0 O A:HOH477 5.0 17.1 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca458 b:20.7 occ:1.00 OE2 A:GLU153 2.2 19.5 1.0 O A:HOH508 2.4 18.1 1.0 O A:HOH494 2.4 21.0 1.0 O A:HOH477 2.4 17.1 1.0 OE1 A:GLU153 2.5 23.2 1.0 OD2 A:ASP170 2.5 24.6 1.0 OD1 A:ASP167 2.5 19.4 1.0 OD1 A:ASP170 2.6 23.9 1.0 CD A:GLU153 2.7 27.6 1.0 CG A:ASP170 2.9 25.9 1.0 CG A:ASP167 3.6 22.3 1.0 CA A:CA457 3.7 21.7 1.0 O A:HOH569 4.1 22.2 1.0 CG A:GLU153 4.2 13.7 1.0 N A:ASP167 4.2 20.2 1.0 OD2 A:ASP167 4.2 24.2 1.0 O A:HOH505 4.4 28.2 1.0 CB A:ASP170 4.4 19.9 1.0 N A:PHE168 4.4 18.5 1.0 O A:HOH617 4.5 33.8 1.0 OE1 A:GLU166 4.5 28.7 1.0 OD1 A:ASP154 4.6 30.8 1.0 O A:HOH757 4.7 26.5 1.0 CB A:ASP167 4.7 20.7 1.0 CB A:GLU166 4.7 21.8 1.0 CA A:ASP167 4.8 19.4 1.0 CA A:GLU153 4.8 17.6 1.0 OD1 A:ASN169 4.9 16.6 1.0 CB A:GLU153 4.9 18.8 1.0 N A:ASP170 5.0 18.6 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca459 b:18.6 occ:1.00 O A:HOH616 2.3 19.6 1.0 OXT A:ACT461 2.4 21.6 0.5 OD1 A:ASP449 2.4 19.0 1.0 OD2 A:ASP449 2.4 22.7 1.0 CG A:ASP449 2.7 21.3 1.0 C A:ACT461 3.3 22.6 0.5 O A:ACT461 3.6 21.1 0.5 CB A:ASP449 4.3 19.2 1.0 O A:ASP449 4.7 20.8 1.0 CH3 A:ACT461 4.7 21.7 0.5 C A:ASP449 4.8 22.8 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of A Putative Lipoprotein (BACOVA_00967) From Bacteroides Ovatus at 2.08 A Resolution within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca460 b:49.2 occ:1.00 OD1 A:ASN135 2.2 38.7 1.0 O A:HOH472 2.2 37.9 1.0 OE1 A:GLN185 2.4 47.5 1.0 OD1 A:ASP138 2.5 37.4 1.0 OD2 A:ASP138 2.6 40.6 1.0 O A:HOH677 2.7 40.3 1.0 CG A:ASP138 2.9 39.7 1.0 CG A:ASN135 3.3 51.3 1.0 CD A:GLN185 3.5 60.3 1.0 CA A:ASN135 3.8 38.5 1.0 CB A:ASN135 3.8 38.9 1.0 NE2 A:GLN185 4.0 54.6 1.0 CB A:ASP138 4.4 33.1 1.0 O A:ASN135 4.4 42.0 1.0 ND2 A:ASN135 4.4 40.1 1.0 C A:ASN135 4.6 42.5 1.0 O A:ASP138 4.6 32.6 1.0 O A:SER184 4.7 49.1 1.0 O A:HOH648 4.8 46.5 1.0 CG A:GLN185 4.8 55.4 1.0 C A:ASP138 4.8 34.5 1.0 N A:ASN135 4.8 38.2 1.0

Joint Center For Structural Genomics (Jcsg), Joint Center For Structural Genomics (Jcsg). N/A N/A.