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Calcium in PDB 3ouu: Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni

Enzymatic activity of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni

All present enzymatic activity of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni:
6.3.4.14; 6.4.1.2;

Protein crystallography data

The structure of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni, PDB code: 3ouu was solved by N.Maltseva, Y.Kim, M.Makowska-Grzyska, R.Mulligan, L.Papazisi, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Ofinfectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.91 / 2.25
Space group P 21 21 21
Cell size a, b, c (Å), α, β, γ (°) 89.830, 100.170, 148.701, 90.00, 90.00, 90.00
R / Rfree (%) 17 / 22.1

Other elements in 3ouu:

The structure of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni also contains other interesting chemical elements:

Arsenic (As) 2 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni (pdb code 3ouu). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni, PDB code: 3ouu:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 3ouu

Go back to Calcium Binding Sites List in 3ouu
Calcium binding site 1 out of 4 in the Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca458

b:43.9
occ:1.00
 O1B A:ANP460 2.4 15.1 1.0
O A:HOH588 2.6 23.0 1.0
OE1 A:GLU289 2.6 30.2 1.0
OE2 A:GLU289 2.7 38.9 1.0
CD A:GLU289 3.0 31.8 1.0
O1G A:ANP460 3.1 42.6 1.0
O3G A:ANP460 3.2 67.1 1.0
PG A:ANP460 3.5 35.7 1.0
OD1 A:ASN291 3.6 38.6 1.0
N3B A:ANP460 3.7 21.7 1.0
PB A:ANP460 3.8 18.9 1.0
CA A:CA459 4.0 22.8 1.0
O A:HOH561 4.4 40.5 1.0
CA A:GLY164 4.4 25.3 1.0
O1A A:ANP460 4.5 15.6 1.0
CG A:GLU289 4.5 24.9 1.0
O A:GLY163 4.5 31.2 1.0
NZ A:LYS117 4.7 20.8 1.0
O2B A:ANP460 4.7 35.2 1.0
O3A A:ANP460 4.7 31.5 1.0
CG A:ASN291 4.8 29.2 1.0
O1 A:CAC461 4.8 1.0 1.0
CD A:LYS117 4.9 22.0 1.0
O2G A:ANP460 4.9 35.2 1.0

Calcium binding site 2 out of 4 in 3ouu

Go back to Calcium Binding Sites List in 3ouu
Calcium binding site 2 out of 4 in the Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca459

b:22.8
occ:1.00
 O1A A:ANP460 2.3 15.6 1.0
OE1 A:GLU289 2.4 30.2 1.0
OE1 A:GLU276 2.6 29.1 1.0
O A:HOH478 2.6 27.4 1.0
OE2 A:GLU276 2.7 28.6 1.0
O1G A:ANP460 2.7 42.6 1.0
N3B A:ANP460 2.8 21.7 1.0
CD A:GLU276 3.0 26.2 1.0
PG A:ANP460 3.3 35.7 1.0
CD A:GLU289 3.6 31.8 1.0
PA A:ANP460 3.7 17.4 1.0
CA A:CA458 4.0 43.9 1.0
O1B A:ANP460 4.0 15.1 1.0
PB A:ANP460 4.1 18.9 1.0
O2G A:ANP460 4.2 35.2 1.0
CG A:GLU289 4.3 24.9 1.0
O3A A:ANP460 4.3 31.5 1.0
O A:HOH701 4.4 45.4 1.0
NE2 A:HIS209 4.4 25.3 1.0
O A:HOH715 4.4 43.5 1.0
O5' A:ANP460 4.4 27.8 1.0
C5' A:ANP460 4.5 26.3 1.0
CG A:GLU276 4.5 17.6 1.0
OE2 A:GLU289 4.5 38.9 1.0
O3G A:ANP460 4.6 67.1 1.0
ND2 A:ASN291 4.6 31.6 1.0
O2A A:ANP460 4.7 21.6 1.0
NZ A:LYS238 4.8 31.6 1.0
OD1 A:ASN291 4.9 38.6 1.0

Calcium binding site 3 out of 4 in 3ouu

Go back to Calcium Binding Sites List in 3ouu
Calcium binding site 3 out of 4 in the Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca455

b:25.5
occ:1.00
 O2A B:ANP457 2.2 19.9 1.0
OE2 B:GLU289 2.4 30.6 1.0
OE1 B:GLU276 2.6 35.0 1.0
O2G B:ANP457 2.6 51.3 1.0
O B:HOH610 2.6 61.0 1.0
OE2 B:GLU276 2.7 33.3 1.0
N3B B:ANP457 2.7 30.0 1.0
CD B:GLU276 3.0 33.1 1.0
PG B:ANP457 3.2 45.7 1.0
O B:HOH584 3.5 70.3 1.0
CD B:GLU289 3.5 29.4 1.0
PA B:ANP457 3.6 24.5 1.0
O1B B:ANP457 3.8 19.1 1.0
CA B:CA456 3.9 45.2 1.0
PB B:ANP457 3.9 30.7 1.0
O3A B:ANP457 4.1 39.9 1.0
O1G B:ANP457 4.2 47.7 1.0
CG B:GLU289 4.2 22.8 1.0
CE1 B:HIS209 4.4 33.3 1.0
O3G B:ANP457 4.4 47.7 1.0
C5' B:ANP457 4.4 29.3 1.0
OE1 B:GLU289 4.4 33.2 1.0
O B:HOH583 4.4 47.8 1.0
O5' B:ANP457 4.5 32.8 1.0
CG B:GLU276 4.5 29.6 1.0
O1A B:ANP457 4.6 26.2 1.0
ND2 B:ASN291 4.7 43.9 1.0
OD1 B:ASN291 4.7 43.8 1.0
NZ B:LYS238 4.8 37.9 1.0
O B:HOH585 5.0 0.5 1.0
O B:HOH616 5.0 57.0 1.0

Calcium binding site 4 out of 4 in 3ouu

Go back to Calcium Binding Sites List in 3ouu
Calcium binding site 4 out of 4 in the Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca456

b:45.2
occ:1.00
 O1B B:ANP457 2.4 19.1 1.0
OE2 B:GLU289 2.6 30.6 1.0
O B:HOH684 2.7 37.0 1.0
O B:HOH611 2.7 54.6 1.0
O3G B:ANP457 2.8 47.7 1.0
OE1 B:GLU289 2.9 33.2 1.0
CD B:GLU289 3.1 29.4 1.0
O2G B:ANP457 3.1 51.3 1.0
O B:HOH736 3.2 48.0 1.0
PG B:ANP457 3.4 45.7 1.0
OD1 B:ASN291 3.5 43.8 1.0
PB B:ANP457 3.8 30.7 1.0
N3B B:ANP457 3.8 30.0 1.0
CA B:CA455 3.9 25.5 1.0
O B:GLY163 4.4 34.6 1.0
CA B:GLY164 4.4 31.9 1.0
CG B:GLU289 4.6 22.8 1.0
NZ B:LYS117 4.6 31.5 1.0
CG B:ASN291 4.7 40.5 1.0
O2A B:ANP457 4.7 19.9 1.0
O2B B:ANP457 4.7 25.5 1.0
O3A B:ANP457 4.7 39.9 1.0
O1G B:ANP457 4.9 47.7 1.0
O B:HOH560 4.9 46.0 1.0

Reference:

N.Maltseva, Y.Kim, M.Makowska-Grzyska, R.Mulligan, L.Papazisi, W.F.Anderson, A.Joachimiak, Center For Structural Genomics Of Infectious Diseases(Csgid). Crystal Structure of Biotin Carboxylase-Beta-Gamma-Atp Complex From Campylobacter Jejuni To Be Published.
Page generated: Sat Jul 13 16:22:14 2024

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