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Calcium in PDB 3p4g: X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium

Protein crystallography data

The structure of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium, PDB code: 3p4g was solved by C.P.Garnham, R.L.Campbell, P.L.Davies, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 34.60 / 1.70
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 57.500, 70.780, 84.250, 99.06, 92.30, 97.47
R / Rfree (%) 16.4 / 20

Other elements in 3p4g:

The structure of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium also contains other interesting chemical elements:

Magnesium (Mg) 4 atoms

Calcium Binding Sites:

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 30; Page 4, Binding sites: 31 - 40; Page 5, Binding sites: 41 - 50; Page 6, Binding sites: 51 - 52;

Binding sites:

The binding sites of Calcium atom in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium (pdb code 3p4g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 52 binding sites of Calcium where determined in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium, PDB code: 3p4g:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 52 in 3p4g

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Calcium binding site 1 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca401

b:3.2
occ:1.00
O A:ALA54 2.2 10.7 1.0
O A:VAL52 2.3 11.7 1.0
O A:ASP34 2.3 15.4 1.0
OD1 A:ASP57 2.3 12.4 1.0
O A:SER36 2.4 13.7 1.0
OD1 A:ASN38 2.4 12.8 1.0
CG A:ASP57 3.1 10.1 1.0
OD2 A:ASP57 3.2 8.9 1.0
CG A:ASN38 3.5 14.0 1.0
C A:ALA54 3.5 10.7 1.0
C A:ASP34 3.5 15.6 1.0
C A:VAL52 3.5 10.6 1.0
C A:SER36 3.6 14.8 1.0
C A:ALA35 3.9 15.2 1.0
N A:SER36 4.0 15.5 1.0
N A:ASN38 4.0 12.2 1.0
C A:LEU53 4.0 9.3 1.0
O A:LEU53 4.1 8.9 1.0
CB A:ASN38 4.1 12.3 1.0
CA A:ALA35 4.2 16.0 1.0
N A:ALA54 4.2 10.6 1.0
N A:ALA35 4.3 16.5 1.0
O A:ALA35 4.3 15.6 1.0
CA A:GLY55 4.3 11.1 1.0
N A:GLY55 4.4 11.7 1.0
CA A:VAL52 4.4 10.0 1.0
CA A:SER36 4.4 15.4 0.5
CA A:SER36 4.4 14.8 0.5
N A:ASP34 4.4 14.1 1.0
CA A:ALA54 4.4 10.8 1.0
CB A:VAL52 4.4 8.9 1.0
N A:LEU53 4.4 9.5 1.0
OD2 A:ASP34 4.5 19.2 1.0
ND2 A:ASN38 4.5 18.1 1.0
CB A:ASP57 4.5 9.0 1.0
CA A:ASP34 4.6 15.8 1.0
CA A:LEU53 4.6 9.8 1.0
N A:ASN37 4.6 13.4 1.0
CB A:LEU53 4.6 10.5 1.0
CA A:ASN37 4.7 13.7 1.0
CA A:ASN38 4.7 12.5 1.0
C A:GLY55 4.7 11.3 1.0
O A:GLY55 4.8 11.2 1.0
C A:ASN37 4.8 13.9 1.0
CA A:CA402 4.9 3.4 1.0
OG A:SER36 4.9 12.7 0.5

Calcium binding site 2 out of 52 in 3p4g

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Calcium binding site 2 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca402

b:3.4
occ:1.00
O A:THR81 2.3 8.8 1.0
OD1 A:ASP84 2.3 9.2 1.0
OD2 A:ASP57 2.3 8.9 1.0
O A:MET79 2.3 8.5 1.0
O A:LEU53 2.4 8.9 1.0
O A:GLY55 2.4 11.2 1.0
OD2 A:ASP84 3.0 8.3 1.0
CG A:ASP84 3.0 10.0 1.0
CG A:ASP57 3.4 10.1 1.0
C A:THR81 3.5 9.3 1.0
C A:MET79 3.5 8.5 1.0
C A:LEU53 3.6 9.3 1.0
C A:GLY55 3.6 11.3 1.0
C A:ALA54 3.8 10.7 1.0
C A:GLY80 3.8 8.7 1.0
N A:GLY55 4.0 11.7 1.0
O A:ALA54 4.0 10.7 1.0
O A:GLY80 4.0 8.1 1.0
CA A:GLY80 4.1 9.1 1.0
N A:THR81 4.1 8.9 1.0
CA A:ALA54 4.2 10.8 1.0
CB A:ASP57 4.2 9.0 1.0
CA A:GLY82 4.2 9.7 1.0
N A:GLY80 4.2 7.7 1.0
N A:ASP57 4.3 10.3 1.0
N A:GLY82 4.3 9.4 1.0
OD1 A:ASP57 4.3 12.4 1.0
N A:ALA54 4.4 10.6 1.0
CA A:GLY55 4.4 11.1 1.0
O A:VAL52 4.4 11.7 1.0
CB A:ASP84 4.5 10.4 1.0
CA A:THR81 4.5 8.4 1.0
N A:LEU53 4.6 9.5 1.0
C A:VAL52 4.6 10.6 1.0
N A:ASP56 4.6 10.6 1.0
CG2 A:VAL52 4.7 8.9 1.0
CA A:LEU53 4.7 9.8 1.0
CA A:MET79 4.7 9.4 1.0
C A:GLY82 4.7 8.9 1.0
CA A:ASP56 4.8 11.1 1.0
CA A:CA403 4.8 3.4 1.0
CA A:CA401 4.9 3.2 1.0
CA A:ASP57 4.9 10.3 1.0
O A:GLY82 4.9 7.3 1.0

Calcium binding site 3 out of 52 in 3p4g

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Calcium binding site 3 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca403

b:3.4
occ:1.00
O A:THR100 2.3 8.6 1.0
OD2 A:ASP84 2.3 8.3 1.0
O A:ALA98 2.4 9.0 1.0
OD1 A:ASP103 2.4 7.6 1.0
O A:GLY82 2.4 7.3 1.0
O A:GLY80 2.4 8.1 1.0
OD2 A:ASP103 2.9 8.2 1.0
CG A:ASP103 3.0 6.3 1.0
C A:GLY82 3.5 8.9 1.0
CG A:ASP84 3.5 10.0 1.0
C A:THR100 3.5 9.2 1.0
C A:ALA98 3.6 8.9 1.0
C A:GLY80 3.6 8.7 1.0
N A:GLY82 3.8 9.4 1.0
C A:THR81 3.8 9.3 1.0
C A:GLY99 3.9 9.3 1.0
O A:GLY99 4.0 7.9 1.0
O A:THR81 4.1 8.8 1.0
CB A:ASP84 4.1 10.4 1.0
CA A:GLY82 4.1 9.7 1.0
CA A:GLY99 4.2 9.1 1.0
N A:THR100 4.2 9.4 1.0
N A:ASP84 4.2 7.6 1.0
CA A:THR81 4.3 8.4 1.0
N A:GLY99 4.3 8.8 1.0
CA A:GLY101 4.3 10.0 1.0
N A:GLY101 4.4 8.9 1.0
N A:THR81 4.4 8.9 1.0
CB A:ASP103 4.5 7.9 1.0
OD1 A:ASP84 4.5 9.2 1.0
O A:MET79 4.5 8.5 1.0
C A:MET79 4.5 8.5 1.0
CA A:THR100 4.5 9.6 1.0
N A:ASN83 4.5 8.3 1.0
CB A:MET79 4.6 8.9 1.0
N A:GLY80 4.6 7.7 1.0
CA A:ALA98 4.7 9.1 1.0
CA A:GLY80 4.7 9.1 1.0
C A:GLY101 4.7 8.5 1.0
O A:GLY101 4.8 7.8 1.0
CA A:CA404 4.8 3.9 1.0
CA A:ASN83 4.8 8.5 1.0
CA A:CA402 4.8 3.4 1.0
CA A:ASP84 4.8 8.3 1.0
CB A:ALA98 5.0 7.7 1.0
C A:ASN83 5.0 8.4 1.0

Calcium binding site 4 out of 52 in 3p4g

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Calcium binding site 4 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca404

b:3.9
occ:1.00
O A:THR119 2.2 8.2 1.0
OD1 A:ASP122 2.3 8.5 1.0
OD2 A:ASP103 2.4 8.2 1.0
O A:ALA117 2.4 7.8 1.0
O A:GLY101 2.4 7.8 1.0
O A:GLY99 2.4 7.9 1.0
OD2 A:ASP122 3.1 7.7 1.0
CG A:ASP122 3.1 7.5 1.0
CG A:ASP103 3.5 6.3 1.0
C A:THR119 3.5 7.2 1.0
C A:GLY101 3.5 8.5 1.0
C A:ALA117 3.6 7.5 1.0
C A:GLY99 3.6 9.3 1.0
C A:THR100 3.8 9.2 1.0
C A:GLY118 3.8 8.0 1.0
N A:GLY101 3.9 8.9 1.0
O A:THR100 4.0 8.6 1.0
O A:GLY118 4.0 8.0 1.0
CB A:ASP103 4.0 7.9 1.0
CA A:GLY118 4.1 7.8 1.0
N A:THR119 4.1 7.1 1.0
CA A:THR100 4.2 9.6 1.0
N A:ASP103 4.2 6.9 1.0
N A:GLY118 4.2 6.9 1.0
CA A:GLY101 4.3 10.0 1.0
CA A:GLY120 4.3 8.0 1.0
N A:GLY120 4.3 8.3 1.0
N A:THR100 4.4 9.4 1.0
O A:ALA98 4.5 9.0 1.0
OD1 A:ASP103 4.5 7.6 1.0
CA A:THR119 4.5 7.5 1.0
CB A:ASP122 4.5 7.9 1.0
N A:ASN102 4.6 8.9 1.0
C A:ALA98 4.6 8.9 1.0
CB A:ALA98 4.6 7.7 1.0
C A:GLY120 4.6 8.1 1.0
O A:GLY120 4.7 7.4 1.0
CA A:ALA117 4.7 6.5 1.0
N A:GLY99 4.7 8.8 1.0
CA A:GLY99 4.7 9.1 1.0
CA A:CA403 4.8 3.4 1.0
CA A:ASP103 4.8 6.5 1.0
CA A:ASN102 4.8 9.3 1.0
CA A:CA405 4.8 4.2 1.0

Calcium binding site 5 out of 52 in 3p4g

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Calcium binding site 5 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca405

b:4.2
occ:1.00
OD1 A:ASP141 2.3 6.1 1.0
O A:GLY120 2.3 7.4 1.0
OD2 A:ASP122 2.4 7.7 1.0
O A:ALA136 2.4 7.7 1.0
O A:GLY118 2.4 8.0 1.0
O A:THR138 2.4 6.9 1.0
OD2 A:ASP141 2.9 7.4 1.0
CG A:ASP141 3.0 5.7 1.0
CG A:ASP122 3.5 7.5 1.0
C A:GLY120 3.6 8.1 1.0
C A:ALA136 3.6 6.7 1.0
C A:GLY118 3.6 8.0 1.0
C A:THR138 3.6 7.3 1.0
C A:GLY137 3.8 8.8 1.0
C A:THR119 3.8 7.2 1.0
O A:THR119 3.9 8.2 1.0
O A:GLY137 3.9 7.2 1.0
N A:GLY120 4.0 8.3 1.0
N A:THR138 4.0 8.7 1.0
CB A:ASP122 4.1 7.9 1.0
CA A:GLY137 4.1 8.0 1.0
N A:ASP122 4.2 6.3 1.0
CA A:THR119 4.2 7.5 1.0
N A:GLY137 4.3 7.6 1.0
CA A:GLY120 4.3 8.0 1.0
N A:THR119 4.4 7.1 1.0
OD1 A:ASP122 4.4 8.5 1.0
CB A:ASP141 4.5 6.5 1.0
CA A:THR138 4.5 7.7 1.0
CB A:ASP139 4.5 6.2 0.5
N A:ASN121 4.6 7.5 1.0
O A:ASP139 4.6 5.6 1.0
O A:ALA117 4.6 7.8 1.0
CB A:ASP139 4.6 7.2 0.5
N A:GLY118 4.6 6.9 1.0
C A:ALA117 4.6 7.5 1.0
N A:ASP139 4.6 6.2 1.0
CA A:CA406 4.7 4.3 1.0
CA A:ALA136 4.7 7.0 1.0
CA A:GLY118 4.7 7.8 1.0
C A:ASP139 4.7 6.2 1.0
CB A:ALA117 4.7 6.3 1.0
CA A:ASN121 4.8 6.4 1.0
CA A:ASP122 4.8 7.0 1.0
CA A:ASP139 4.8 6.9 0.5
CA A:CA404 4.8 3.9 1.0
CA A:ASP139 4.8 7.4 0.5
CB A:ALA136 5.0 7.3 1.0
C A:ASN121 5.0 7.2 1.0

Calcium binding site 6 out of 52 in 3p4g

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Calcium binding site 6 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca406

b:4.3
occ:1.00
O A:THR157 2.2 7.5 1.0
O A:ALA155 2.3 7.7 1.0
OD1 A:ASP160 2.3 7.3 1.0
OD2 A:ASP141 2.3 7.4 1.0
O A:ASP139 2.4 5.6 1.0
O A:GLY137 2.4 7.2 1.0
CG A:ASP160 3.0 9.6 1.0
OD2 A:ASP160 3.0 7.6 1.0
CG A:ASP141 3.4 5.7 1.0
C A:THR157 3.5 7.8 1.0
C A:ALA155 3.5 7.7 1.0
C A:ASP139 3.6 6.2 1.0
C A:GLY137 3.6 8.8 1.0
O A:THR138 3.7 6.9 1.0
C A:THR138 3.8 7.3 1.0
C A:GLY156 3.9 7.3 1.0
O A:GLY156 4.1 7.0 1.0
CA A:GLY156 4.1 8.0 1.0
CB A:ASP141 4.1 6.5 1.0
N A:ASP139 4.1 6.2 1.0
N A:ASP141 4.2 6.3 1.0
N A:GLY156 4.2 8.0 1.0
N A:THR157 4.2 7.8 1.0
CA A:THR138 4.3 7.7 1.0
CA A:GLY158 4.3 7.7 1.0
N A:GLY158 4.3 9.0 1.0
OD1 A:ASP141 4.4 6.1 1.0
O A:ALA136 4.4 7.7 1.0
N A:THR138 4.4 8.7 1.0
CA A:ASP139 4.4 7.4 0.5
CA A:ASP139 4.5 6.9 0.5
C A:ALA136 4.5 6.7 1.0
N A:ASN140 4.5 6.9 1.0
CA A:THR157 4.5 7.7 1.0
CB A:ASP160 4.5 6.2 1.0
CB A:ALA136 4.5 7.3 1.0
N A:GLY137 4.6 7.6 1.0
CA A:CA405 4.7 4.2 1.0
CA A:ASN140 4.7 7.2 1.0
CA A:ALA155 4.7 6.8 1.0
CA A:GLY137 4.7 8.0 1.0
O A:GLY158 4.7 8.1 1.0
C A:GLY158 4.7 7.2 1.0
CA A:ASP141 4.8 5.3 1.0
CA A:CA407 4.9 4.3 1.0
C A:ASN140 4.9 7.3 1.0

Calcium binding site 7 out of 52 in 3p4g

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Calcium binding site 7 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca407

b:4.3
occ:1.00
OD1 A:ASP179 2.3 7.7 1.0
O A:MET174 2.3 8.1 1.0
OD2 A:ASP160 2.4 7.6 1.0
O A:GLY156 2.4 7.0 1.0
O A:GLY158 2.4 8.1 1.0
O A:THR176 2.4 7.7 1.0
OD2 A:ASP179 3.0 6.2 1.0
CG A:ASP179 3.0 7.5 1.0
CG A:ASP160 3.5 9.6 1.0
C A:GLY158 3.5 7.2 1.0
C A:MET174 3.6 6.8 1.0
C A:GLY156 3.6 7.3 1.0
C A:THR176 3.6 7.0 1.0
C A:GLY175 3.8 8.2 1.0
C A:THR157 3.8 7.8 1.0
O A:GLY175 3.9 8.5 1.0
N A:GLY158 3.9 9.0 1.0
O A:THR157 4.0 7.5 1.0
N A:THR176 4.0 6.2 1.0
CB A:ASP160 4.1 6.2 1.0
CA A:GLY175 4.2 8.9 1.0
CA A:THR157 4.2 7.7 1.0
N A:ASP160 4.2 4.2 1.0
CA A:GLY158 4.2 7.7 1.0
N A:GLY175 4.3 6.7 1.0
N A:THR157 4.4 7.8 1.0
OD1 A:ASP160 4.4 7.3 1.0
CA A:THR176 4.5 7.1 1.0
CB A:ASP179 4.5 6.3 1.0
N A:GLY156 4.5 8.0 1.0
C A:ALA155 4.6 7.7 1.0
CB A:ASP177 4.6 7.3 1.0
CA A:MET174 4.6 6.5 1.0
N A:ASN159 4.6 7.8 1.0
O A:ALA155 4.6 7.7 1.0
N A:ASP177 4.7 7.7 1.0
CA A:GLY156 4.7 8.0 1.0
CB A:ALA155 4.7 6.7 1.0
O A:ASP177 4.7 5.3 1.0
CA A:CA408 4.7 4.7 1.0
C A:ASP177 4.8 7.3 1.0
CB A:MET174 4.8 4.3 1.0
CA A:ASP177 4.9 6.5 1.0
CA A:ASP160 4.9 4.5 1.0
CA A:CA406 4.9 4.3 1.0
CA A:ASN159 4.9 5.8 1.0

Calcium binding site 8 out of 52 in 3p4g

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Calcium binding site 8 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca408

b:4.7
occ:1.00
O A:THR197 2.3 8.6 1.0
OD1 A:ASP200 2.3 5.7 1.0
OD2 A:ASP179 2.3 6.2 1.0
O A:LEU195 2.4 7.3 1.0
O A:ASP177 2.4 5.3 1.0
O A:GLY175 2.5 8.5 1.0
CG A:ASP200 3.0 7.3 1.0
OD2 A:ASP200 3.0 8.2 1.0
CG A:ASP179 3.5 7.5 1.0
C A:THR197 3.5 8.5 1.0
C A:LEU195 3.6 7.9 1.0
C A:ASP177 3.6 7.3 1.0
C A:GLY175 3.7 8.2 1.0
C A:THR176 3.8 7.0 1.0
O A:THR176 3.8 7.7 1.0
O A:ASP196 4.0 7.4 1.0
C A:ASP196 4.0 8.0 1.0
N A:ASP177 4.1 7.7 1.0
CB A:ASP179 4.1 6.3 1.0
N A:THR197 4.2 6.9 1.0
N A:ASP179 4.2 4.6 1.0
CA A:THR176 4.3 7.1 1.0
CA A:GLY198 4.3 6.9 1.0
N A:GLY198 4.3 9.1 1.0
OD1 A:ASP179 4.4 7.7 1.0
N A:ASP196 4.4 8.1 1.0
CA A:ASP177 4.4 6.5 1.0
N A:THR176 4.5 6.2 1.0
CB A:ASP196 4.5 8.7 1.0
CA A:THR197 4.5 8.1 1.0
O A:MET174 4.5 8.1 1.0
CB A:ASP200 4.5 5.6 1.0
CA A:ASP196 4.5 6.9 1.0
N A:ASN178 4.6 5.6 1.0
C A:MET174 4.6 6.8 1.0
CA A:LEU195 4.6 6.9 1.0
CB A:MET174 4.6 4.3 1.0
N A:GLY175 4.6 6.7 1.0
CA A:CA407 4.7 4.3 1.0
C A:GLY198 4.7 7.3 1.0
CA A:ASN178 4.8 6.2 1.0
CA A:GLY175 4.8 8.9 1.0
CA A:ASP179 4.8 4.6 1.0
CA A:CA409 4.8 4.4 1.0
O A:GLY198 4.9 7.7 1.0
CB A:LEU195 4.9 6.2 1.0
C A:ASN178 5.0 4.5 1.0

Calcium binding site 9 out of 52 in 3p4g

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Calcium binding site 9 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca409

b:4.4
occ:1.00
O A:GLY214 2.3 8.1 1.0
O A:THR216 2.3 7.0 1.0
OD1 A:ASP219 2.3 7.2 1.0
OD2 A:ASP200 2.3 8.2 1.0
O A:GLY198 2.4 7.7 1.0
O A:ASP196 2.4 7.4 1.0
OD2 A:ASP219 3.0 7.7 1.0
CG A:ASP219 3.0 8.4 1.0
CG A:ASP200 3.5 7.3 1.0
C A:GLY214 3.5 7.6 1.0
C A:GLY198 3.5 7.3 1.0
C A:THR216 3.5 7.2 1.0
C A:ASP196 3.6 8.0 1.0
C A:GLY215 3.8 8.2 1.0
C A:THR197 3.9 8.5 1.0
N A:GLY198 4.0 9.1 1.0
O A:GLY215 4.0 7.8 1.0
CB A:ASP200 4.1 5.6 1.0
O A:THR197 4.1 8.6 1.0
N A:THR216 4.1 8.8 1.0
N A:ASP200 4.1 5.5 1.0
CA A:GLY215 4.2 8.6 1.0
CA A:THR197 4.3 8.1 1.0
N A:GLY215 4.3 7.7 1.0
CA A:GLY198 4.3 6.9 1.0
CA A:GLY217 4.4 7.7 1.0
N A:GLY217 4.4 9.1 1.0
N A:THR197 4.4 6.9 1.0
OD1 A:ASP200 4.5 5.7 1.0
CB A:ASP219 4.5 4.8 1.0
CA A:THR216 4.5 8.8 1.0
C A:LEU195 4.5 7.9 1.0
O A:LEU195 4.5 7.3 1.0
N A:ASP196 4.5 8.1 1.0
CA A:GLY214 4.5 8.1 1.0
N A:ASP199 4.5 7.2 1.0
C A:GLY217 4.6 8.6 1.0
CB A:LEU195 4.6 6.2 1.0
O A:GLY217 4.7 7.6 1.0
CA A:ASP196 4.7 6.9 1.0
CA A:CA410 4.7 4.6 1.0
CA A:ASP199 4.8 6.6 1.0
CA A:ASP200 4.8 6.2 1.0
CA A:CA408 4.8 4.7 1.0
C A:ASP199 4.9 7.4 1.0

Calcium binding site 10 out of 52 in 3p4g

Go back to Calcium Binding Sites List in 3p4g
Calcium binding site 10 out of 52 in the X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of X-Ray Crystal Structure of A Hyperactive, CA2+-Dependent, Beta-Helical Antifreeze Protein From An Antarctic Bacterium within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca410

b:4.6
occ:1.00
O A:THR235 2.3 8.9 1.0
O A:GLY233 2.4 8.5 1.0
OD2 A:ASP219 2.4 7.7 1.0
O A:GLY217 2.4 7.6 1.0
OD1 A:ASP238 2.4 7.1 1.0
O A:GLY215 2.5 7.8 1.0
OD2 A:ASP238 2.9 7.3 1.0
CG A:ASP238 3.0 5.3 1.0
CG A:ASP219 3.5 8.4 1.0
C A:GLY233 3.5 7.9 1.0
C A:THR235 3.5 6.9 1.0
C A:GLY217 3.6 8.6 1.0
C A:GLY215 3.6 8.2 1.0
C A:GLY234 3.8 7.3 1.0
C A:THR216 3.8 7.2 1.0
O A:THR216 3.9 7.0 1.0
O A:GLY234 3.9 7.8 1.0
CA A:GLY234 4.1 7.1 1.0
N A:GLY217 4.1 9.1 1.0
N A:THR235 4.1 7.2 1.0
CB A:ASP219 4.2 4.8 1.0
N A:ASP219 4.2 6.0 1.0
N A:GLY234 4.2 8.2 1.0
CA A:THR216 4.2 8.8 1.0
C A:GLY214 4.3 7.6 1.0
CA A:GLY236 4.3 6.8 1.0
N A:GLY236 4.4 7.8 1.0
O A:GLY214 4.4 8.1 1.0
CA A:GLY217 4.4 7.7 1.0
N A:THR216 4.4 8.8 1.0
N A:GLY215 4.4 7.7 1.0
OD1 A:ASP219 4.5 7.2 1.0
CB A:ASP238 4.5 6.3 1.0
N A:ASN218 4.5 7.2 1.0
CA A:THR235 4.5 6.8 1.0
CA A:GLY233 4.6 8.1 1.0
C A:GLY236 4.6 6.9 1.0
CA A:ASN218 4.7 7.1 1.0
CA A:GLY215 4.7 8.6 1.0
CA A:CA411 4.7 3.7 1.0
CA A:GLY214 4.7 8.1 1.0
CA A:CA409 4.7 4.4 1.0
O A:GLY236 4.7 5.9 1.0
CA A:ASP219 4.9 4.5 1.0
C A:ASN218 4.9 7.2 1.0

Reference:

C.P.Garnham, R.L.Campbell, P.L.Davies. Anchored Clathrate Waters Bind Antifreeze Proteins to Ice. Proc.Natl.Acad.Sci.Usa V. 108 7363 2011.
ISSN: ISSN 0027-8424
PubMed: 21482800
DOI: 10.1073/PNAS.1100429108
Page generated: Sat Dec 12 04:24:05 2020

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