Atomistry » Calcium » PDB 3p1h-3pcq » 3p7t
Atomistry »
  Calcium »
    PDB 3p1h-3pcq »
      3p7t »

Calcium in PDB 3p7t: Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy)

Enzymatic activity of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy)

All present enzymatic activity of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy):
3.4.24.27;

Protein crystallography data

The structure of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy), PDB code: 3p7t was solved by D.H.Juers, M.Weik, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 31.65 / 2.20
Space group P 61 2 2
Cell size a, b, c (Å), α, β, γ (°) 93.560, 93.560, 128.940, 90.00, 90.00, 120.00
R / Rfree (%) 14.6 / 20.4

Other elements in 3p7t:

The structure of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy) also contains other interesting chemical elements:

Zinc (Zn) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy) (pdb code 3p7t). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy), PDB code: 3p7t:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in 3p7t

Go back to Calcium Binding Sites List in 3p7t
Calcium binding site 1 out of 4 in the Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca317

b:8.3
occ:1.00
 O E:GLU187 2.3 7.9 1.0
OD2 E:ASP138 2.4 8.3 1.0
O E:HOH354 2.5 8.8 1.0
OD1 E:ASP185 2.5 8.3 1.0
OE2 E:GLU190 2.5 6.9 1.0
OE1 E:GLU190 2.6 4.8 1.0
OE1 E:GLU177 2.6 5.9 1.0
OE2 E:GLU177 2.8 8.5 1.0
CD E:GLU190 2.9 7.6 1.0
CD E:GLU177 3.0 8.4 1.0
C E:GLU187 3.4 9.2 1.0
CG E:ASP185 3.4 10.9 1.0
CG E:ASP138 3.4 7.3 1.0
OD2 E:ASP185 3.8 12.3 1.0
CA E:CA318 3.9 13.9 1.0
CB E:ASP138 4.0 5.2 1.0
O E:ASP185 4.1 10.1 1.0
N E:ILE188 4.2 8.6 1.0
N E:GLU187 4.3 9.7 1.0
CA E:ILE188 4.3 8.6 1.0
CG E:GLU190 4.4 7.7 1.0
CA E:GLU187 4.4 10.6 1.0
OD1 E:ASP138 4.4 8.6 1.0
N E:GLY189 4.4 7.7 1.0
O E:HOH358 4.5 11.1 1.0
CG E:GLU177 4.5 6.8 1.0
C E:ASP185 4.5 10.4 1.0
N E:ASP185 4.7 10.9 1.0
CB E:ASP185 4.7 10.3 1.0
C E:ILE188 4.8 8.9 1.0
CB E:GLU187 4.8 10.9 1.0
CA E:ASP185 4.9 10.4 1.0
CB E:GLU177 5.0 7.6 1.0
N E:GLU190 5.0 8.4 1.0

Calcium binding site 2 out of 4 in 3p7t

Go back to Calcium Binding Sites List in 3p7t
Calcium binding site 2 out of 4 in the Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca318

b:13.9
occ:1.00
 O E:HOH413 2.2 15.4 1.0
O E:ASN183 2.3 14.9 1.0
O E:HOH361 2.3 11.5 1.0
OE2 E:GLU190 2.4 6.9 1.0
OD2 E:ASP185 2.5 12.3 1.0
OE2 E:GLU177 2.5 8.5 1.0
CD E:GLU177 3.2 8.4 1.0
CG E:ASP185 3.4 10.9 1.0
CD E:GLU190 3.4 7.6 1.0
C E:ASN183 3.4 15.0 1.0
OE1 E:GLU177 3.7 5.9 1.0
OD1 E:ASP185 3.8 8.3 1.0
CA E:CA317 3.9 8.3 1.0
CG E:GLU190 3.9 7.7 1.0
OD2 E:ASP191 4.0 14.8 1.0
CA E:PRO184 4.1 12.2 1.0
O E:HOH506 4.1 21.0 1.0
OD1 E:ASP191 4.1 14.1 1.0
CB E:ASN183 4.2 17.6 1.0
CG E:GLU177 4.2 6.8 1.0
N E:ASP185 4.2 10.9 1.0
O E:LYS182 4.2 17.6 1.0
C E:PRO184 4.2 11.4 1.0
N E:PRO184 4.3 13.7 1.0
CG E:ASP191 4.4 12.9 1.0
OE1 E:GLU190 4.4 4.8 1.0
CA E:ASN183 4.4 16.7 1.0
CB E:ASP185 4.5 10.3 1.0
O E:PRO184 4.9 12.4 1.0
CA E:ASP185 5.0 10.4 1.0

Calcium binding site 3 out of 4 in 3p7t

Go back to Calcium Binding Sites List in 3p7t
Calcium binding site 3 out of 4 in the Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca319

b:8.3
occ:1.00
 O E:GLN61 2.3 6.7 1.0
O E:HOH430 2.4 9.1 1.0
OD1 E:ASP59 2.4 11.9 1.0
O E:HOH396 2.4 4.4 1.0
OD1 E:ASP57 2.4 9.2 1.0
O E:HOH420 2.5 7.6 1.0
OD2 E:ASP57 2.6 6.2 1.0
CG E:ASP57 2.9 8.3 1.0
CG E:ASP59 3.4 10.6 1.0
C E:GLN61 3.5 8.2 1.0
OD2 E:ASP59 3.8 9.6 1.0
N E:GLN61 4.0 8.8 1.0
O E:HOH422 4.1 11.6 1.0
CA E:GLN61 4.1 10.2 1.0
O E:HOH471 4.3 21.4 1.0
N E:ASP59 4.3 7.7 1.0
CB E:GLN61 4.4 9.8 1.0
CB E:ASP57 4.4 8.0 1.0
O E:HOH434 4.4 11.5 1.0
O E:HOH486 4.5 26.9 1.0
N E:PHE62 4.6 7.1 1.0
OD2 E:ASP67 4.6 7.0 1.0
O E:HOH364 4.6 6.8 1.0
CB E:ASP59 4.7 8.1 1.0
N E:ASN60 4.8 8.2 1.0
N E:ALA58 4.8 7.8 1.0
CA E:PHE62 4.8 7.7 1.0
CA E:ASP59 4.9 8.1 1.0
O E:HOH662 5.0 19.0 1.0

Calcium binding site 4 out of 4 in 3p7t

Go back to Calcium Binding Sites List in 3p7t
Calcium binding site 4 out of 4 in the Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy)


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy) within 5.0Å range:
probe atom residue distance (Å) B Occ
E:Ca320

b:13.0
occ:1.00
 O E:ILE197 2.3 19.9 1.0
O E:HOH418 2.3 15.9 1.0
O E:HOH362 2.3 11.8 1.0
O E:TYR193 2.4 11.6 1.0
OG1 E:THR194 2.4 12.3 1.0
OD1 E:ASP200 2.4 11.0 1.0
O E:THR194 2.5 14.4 1.0
C E:THR194 3.3 14.6 1.0
C E:TYR193 3.4 11.6 1.0
C E:ILE197 3.5 20.9 1.0
CG E:ASP200 3.5 12.6 1.0
CB E:THR194 3.5 12.8 1.0
CA E:THR194 3.7 13.5 1.0
OD2 E:ASP200 3.8 11.4 1.0
N E:THR194 4.0 12.3 1.0
CA E:ILE197 4.1 20.9 1.0
N E:ILE197 4.2 22.3 1.0
CB E:ILE197 4.3 21.2 1.0
O E:ASP200 4.3 12.8 1.0
N E:PRO195 4.4 16.5 1.0
O E:HOH522 4.5 26.2 1.0
CD2 E:TYR193 4.5 8.5 1.0
O E:GLU190 4.5 9.5 1.0
N E:SER198 4.5 20.4 1.0
CA E:TYR193 4.6 10.8 1.0
CB E:TYR193 4.6 11.3 1.0
O E:HOH502 4.6 20.3 1.0
N E:ASP200 4.6 14.8 1.0
CG2 E:THR194 4.7 12.4 1.0
CA E:PRO195 4.8 18.2 1.0
CB E:ASP200 4.8 12.9 1.0
C E:ASP200 4.8 13.5 1.0
CA E:SER198 4.9 21.2 1.0
C E:PRO195 4.9 19.5 1.0
C E:SER198 4.9 19.8 1.0
N E:GLY199 5.0 19.1 1.0
O E:HOH414 5.0 29.1 1.0
CG E:TYR193 5.0 11.1 1.0
CA E:ASP200 5.0 13.5 1.0

Reference:

D.H.Juers, M.Weik. Radiation Damage Study of Thermolysin - 160K Structure A (0.1 Mgy) To Be Published.
Page generated: Sat Dec 12 04:24:22 2020

Last articles

Zn in 7VD8
Zn in 7V1R
Zn in 7V1Q
Zn in 7VPF
Zn in 7T85
Zn in 7T5F
Zn in 7NF9
Zn in 7M4M
Zn in 7M4O
Zn in 7M4N
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy