Calcium in PDB 3pat: Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin
Calcium Binding Sites:
The binding sites of Calcium atom in the Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin
(pdb code 3pat). This binding sites where shown within
5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the
Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin, PDB code: 3pat:
Jump to Calcium binding site number:
1;
2;
Calcium binding site 1 out
of 2 in 3pat
Go back to
Calcium Binding Sites List in 3pat
Calcium binding site 1 out
of 2 in the Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 1 of Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca110
b:1.0
occ:1.00
|
O
|
A:PHE57
|
2.3
|
0.3
|
1.0
|
OD1
|
A:ASP53
|
2.3
|
1.3
|
1.0
|
OD2
|
A:ASP53
|
2.6
|
1.3
|
1.0
|
OD1
|
A:ASP51
|
2.8
|
0.8
|
1.0
|
CG
|
A:ASP53
|
2.9
|
1.1
|
1.0
|
OG
|
A:SER55
|
2.9
|
1.2
|
1.0
|
CG
|
A:GLU59
|
3.3
|
0.7
|
1.0
|
C
|
A:PHE57
|
3.3
|
0.3
|
1.0
|
OE1
|
A:GLU62
|
3.5
|
1.7
|
1.0
|
CD
|
A:GLU59
|
3.6
|
0.8
|
1.0
|
N
|
A:GLU59
|
3.7
|
0.4
|
1.0
|
OE1
|
A:GLU59
|
3.7
|
1.8
|
1.0
|
CB
|
A:SER55
|
3.8
|
0.6
|
1.0
|
CD
|
A:GLU62
|
3.9
|
1.3
|
1.0
|
CG
|
A:ASP51
|
3.9
|
0.6
|
1.0
|
OE2
|
A:GLU59
|
4.0
|
1.0
|
1.0
|
CB
|
A:GLU59
|
4.0
|
0.6
|
1.0
|
OE2
|
A:GLU62
|
4.1
|
2.1
|
1.0
|
CA
|
A:PHE57
|
4.1
|
0.3
|
1.0
|
CB
|
A:PHE57
|
4.2
|
0.4
|
1.0
|
N
|
A:ILE58
|
4.2
|
0.3
|
1.0
|
N
|
A:PHE57
|
4.2
|
0.4
|
1.0
|
CA
|
A:ILE58
|
4.3
|
0.3
|
1.0
|
N
|
A:SER55
|
4.3
|
0.6
|
1.0
|
CG
|
A:GLU62
|
4.3
|
0.9
|
1.0
|
CB
|
A:ASP53
|
4.4
|
1.0
|
1.0
|
C
|
A:ILE58
|
4.4
|
0.3
|
1.0
|
CA
|
A:GLU59
|
4.5
|
0.5
|
1.0
|
CA
|
A:ASP51
|
4.5
|
0.4
|
1.0
|
CA
|
A:SER55
|
4.5
|
0.6
|
1.0
|
N
|
A:ASP53
|
4.6
|
1.0
|
1.0
|
CB
|
A:ASP51
|
4.7
|
0.5
|
1.0
|
OD2
|
A:ASP51
|
4.7
|
0.8
|
1.0
|
C
|
A:SER55
|
4.8
|
0.5
|
1.0
|
C
|
A:ASP51
|
4.8
|
0.4
|
1.0
|
O
|
A:SER55
|
4.9
|
0.4
|
1.0
|
CA
|
A:ASP53
|
5.0
|
0.9
|
1.0
|
N
|
A:ALA52
|
5.0
|
0.7
|
1.0
|
|
Calcium binding site 2 out
of 2 in 3pat
Go back to
Calcium Binding Sites List in 3pat
Calcium binding site 2 out
of 2 in the Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin
Mono view
Stereo pair view
|
A full contact list of Calcium with other atoms in the Ca binding
site number 2 of Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin within 5.0Å range:
probe
|
atom
|
residue
|
distance (Å)
|
B
|
Occ
|
A:Ca111
b:0.9
occ:1.00
|
OD1
|
A:ASP94
|
2.8
|
0.4
|
1.0
|
OD1
|
A:ASP90
|
2.8
|
1.1
|
1.0
|
O
|
A:LYS96
|
2.9
|
0.5
|
1.0
|
OD1
|
A:ASP92
|
2.9
|
0.9
|
1.0
|
OE1
|
A:GLU101
|
3.0
|
1.7
|
1.0
|
CD
|
A:GLU101
|
3.1
|
1.1
|
1.0
|
OD2
|
A:ASP92
|
3.2
|
1.1
|
1.0
|
CG
|
A:ASP92
|
3.3
|
0.9
|
1.0
|
OE2
|
A:GLU101
|
3.3
|
1.7
|
1.0
|
CG
|
A:GLU101
|
3.5
|
0.5
|
1.0
|
CG
|
A:ASP94
|
3.6
|
0.5
|
1.0
|
CG
|
A:ASP90
|
3.7
|
0.7
|
1.0
|
OD2
|
A:ASP94
|
3.9
|
0.6
|
1.0
|
C
|
A:LYS96
|
3.9
|
0.4
|
1.0
|
CA
|
A:ASP90
|
4.0
|
0.5
|
1.0
|
CA
|
A:ILE97
|
4.1
|
0.3
|
1.0
|
OD2
|
A:ASP90
|
4.2
|
1.2
|
1.0
|
CB
|
A:GLU101
|
4.2
|
0.4
|
1.0
|
O
|
A:ALA89
|
4.3
|
0.9
|
1.0
|
N
|
A:LYS91
|
4.4
|
0.7
|
1.0
|
CB
|
A:ASP90
|
4.5
|
0.5
|
1.0
|
N
|
A:ILE97
|
4.5
|
0.3
|
1.0
|
C
|
A:ASP90
|
4.6
|
0.6
|
1.0
|
N
|
A:ASP92
|
4.6
|
0.7
|
1.0
|
CB
|
A:ASP92
|
4.6
|
1.0
|
1.0
|
CG1
|
A:ILE97
|
4.7
|
0.4
|
1.0
|
CD1
|
A:ILE97
|
4.8
|
1.4
|
1.0
|
CB
|
A:ASP94
|
4.8
|
0.7
|
1.0
|
N
|
A:GLY98
|
4.9
|
0.3
|
1.0
|
N
|
A:LYS96
|
4.9
|
0.5
|
1.0
|
N
|
A:ASP94
|
4.9
|
0.7
|
1.0
|
CB
|
A:ILE97
|
4.9
|
0.3
|
1.0
|
|
Reference:
A.Padilla,
A.Cave,
J.Parello,
G.Etienne,
C.Baldellon.
Comparison Between the Crystal and the Solution Structures of the Ef Hand Parvalbumin To Be Published.
Page generated: Sat Dec 12 04:24:33 2020
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