Calcium in PDB 3pfq: Crystal Structure and Allosteric Activation of Protein Kinase C Beta II

All present enzymatic activity of Crystal Structure and Allosteric Activation of Protein Kinase C Beta II:
2.7.11.13;

The structure of Crystal Structure and Allosteric Activation of Protein Kinase C Beta II, PDB code: 3pfq was solved by T.A.Leonard, B.Rozycki, L.F.Saidi, G.Hummer, J.H.Hurley, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	57.10 / 4.00
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	114.270, 114.270, 170.840, 90.00, 90.00, 120.00
R / Rfree (%)	19.3 / 24.5

The structure of Crystal Structure and Allosteric Activation of Protein Kinase C Beta II also contains other interesting chemical elements:

Zinc

(Zn)

2 atoms

The binding sites of Calcium atom in the Crystal Structure and Allosteric Activation of Protein Kinase C Beta II (pdb code 3pfq). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 3 binding sites of Calcium where determined in the Crystal Structure and Allosteric Activation of Protein Kinase C Beta II, PDB code: 3pfq:
Jump to Calcium binding site number: 1; 2; 3;

Calcium binding site 1 out of 3 in the Crystal Structure and Allosteric Activation of Protein Kinase C Beta II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure and Allosteric Activation of Protein Kinase C Beta II within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca674 b:76.6 occ:1.00 O A:TRP247 2.8 95.4 1.0 OD2 A:ASP187 3.0 81.0 1.0 OD1 A:ASP193 3.1 0.7 1.0 OD2 A:ASP246 3.1 83.0 1.0 OD1 A:ASP187 3.1 81.0 1.0 CG A:ASP187 3.3 81.0 1.0 OD1 A:ASP246 3.4 83.0 1.0 C A:TRP247 3.4 95.4 1.0 OD1 A:ASP248 3.5 0.8 1.0 CG A:ASP246 3.6 83.0 1.0 CA A:ASP248 3.7 89.8 1.0 CG A:ASP193 3.7 0.7 1.0 N A:ASP248 3.8 89.8 1.0 CG A:ASP248 3.9 0.8 1.0 CB A:ASP193 4.3 0.7 1.0 CB A:ASP248 4.4 0.8 1.0 N A:TRP247 4.4 95.4 1.0 OD2 A:ASP193 4.4 0.7 1.0 CA A:TRP247 4.4 95.4 1.0 OD2 A:ASP248 4.6 0.8 1.0 CB A:ASP187 4.7 81.0 1.0 C A:ASP246 4.7 79.7 1.0 C A:ASP248 4.8 89.8 1.0 N A:ASP193 4.8 84.1 1.0 N A:LEU249 4.8 96.1 1.0 CA A:CA675 4.9 61.9 1.0 O A:ASP246 4.9 79.7 1.0 CB A:ASP246 4.9 83.0 1.0

Calcium binding site 2 out of 3 in the Crystal Structure and Allosteric Activation of Protein Kinase C Beta II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure and Allosteric Activation of Protein Kinase C Beta II within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca675 b:61.9 occ:1.00 OD2 A:ASP248 2.8 0.8 1.0 OD2 A:ASP246 2.9 83.0 1.0 OD1 A:ASP248 2.9 0.8 1.0 OD2 A:ASP254 2.9 0.9 1.0 O A:MET186 3.0 72.0 1.0 CG A:ASP248 3.2 0.8 1.0 OD1 A:ASP187 3.3 81.0 1.0 CG A:ASP254 3.5 0.9 1.0 CB A:ASP254 3.6 0.9 1.0 CA A:CA676 3.8 75.9 1.0 CG A:ASP246 4.0 83.0 1.0 CG A:MET186 4.1 95.7 1.0 C A:MET186 4.1 72.0 1.0 CG A:ASP187 4.3 81.0 1.0 N A:ASP254 4.4 69.1 1.0 OD1 A:ASP254 4.4 0.9 1.0 CB A:MET186 4.5 95.7 1.0 CB A:ASP246 4.6 83.0 1.0 CA A:ASP254 4.6 69.1 1.0 CB A:ASP248 4.7 0.8 1.0 OD2 A:ASP187 4.8 81.0 1.0 CA A:CA674 4.9 76.6 1.0 CA A:MET186 4.9 72.0 1.0

Calcium binding site 3 out of 3 in the Crystal Structure and Allosteric Activation of Protein Kinase C Beta II


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure and Allosteric Activation of Protein Kinase C Beta II within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca676 b:75.9 occ:1.00 O A:ARG252 2.8 0.6 1.0 OD2 A:ASP248 3.1 0.8 1.0 OG A:SER251 3.1 0.8 1.0 CB A:SER251 3.2 0.8 1.0 CG A:ASP248 3.5 0.8 1.0 C A:ARG252 3.6 0.6 1.0 OD1 A:ASP254 3.6 0.9 1.0 N A:ARG252 3.6 0.6 1.0 CA A:CA675 3.8 61.9 1.0 CG A:ASP254 3.8 0.9 1.0 OD2 A:ASP254 3.8 0.9 1.0 OD1 A:ASP248 4.0 0.8 1.0 C A:SER251 4.0 0.1 1.0 CA A:ARG252 4.1 0.6 1.0 CA A:SER251 4.3 0.1 1.0 CB A:ASP248 4.3 0.8 1.0 N A:ASN253 4.4 87.2 1.0 N A:ASP254 4.6 69.1 1.0 C A:ASN253 4.7 87.2 1.0 O A:SER251 4.7 0.1 1.0 CB A:ARG252 4.7 0.0 1.0 CB A:ASP254 4.8 0.9 1.0 CA A:ASN253 4.8 87.2 1.0

T.A.Leonard, B.Rozycki, L.F.Saidi, G.Hummer, J.H.Hurley. Crystal Structure and Allosteric Activation of Protein Kinase C Beta II Cell(Cambridge,Mass.) V. 144 55 2011.
ISSN: ISSN 0092-8674
PubMed: 21215369
DOI: 10.1016/J.CELL.2010.12.013