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Calcium in PDB 3pgb: Crystal Structure of Aspergillus Nidulans Amine Oxidase

Enzymatic activity of Crystal Structure of Aspergillus Nidulans Amine Oxidase

All present enzymatic activity of Crystal Structure of Aspergillus Nidulans Amine Oxidase:
1.4.3.6;

Protein crystallography data

The structure of Crystal Structure of Aspergillus Nidulans Amine Oxidase, PDB code: 3pgb was solved by A.P.Mcgrath, J.M.Guss, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 38.44 / 2.45
Space group I 4 2 2
Cell size a, b, c (Å), α, β, γ (°) 179.861, 179.861, 148.178, 90.00, 90.00, 90.00
R / Rfree (%) 21.1 / 25.4

Other elements in 3pgb:

The structure of Crystal Structure of Aspergillus Nidulans Amine Oxidase also contains other interesting chemical elements:

Copper (Cu) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Aspergillus Nidulans Amine Oxidase (pdb code 3pgb). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Aspergillus Nidulans Amine Oxidase, PDB code: 3pgb:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3pgb

Go back to Calcium Binding Sites List in 3pgb
Calcium binding site 1 out of 2 in the Crystal Structure of Aspergillus Nidulans Amine Oxidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Aspergillus Nidulans Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca902

b:16.4
occ:1.00
O A:PHE697 2.3 16.7 1.0
OD1 A:ASN699 2.3 17.9 1.0
OE1 A:GLU701 2.4 21.0 1.0
O A:HOH1013 2.4 7.1 1.0
O A:HOH1003 2.4 10.7 1.0
OE1 A:GLU604 2.5 21.5 1.0
OE2 A:GLU604 2.6 19.4 1.0
CD A:GLU604 2.9 21.6 1.0
CD A:GLU701 3.4 20.3 1.0
C A:PHE697 3.5 16.9 1.0
CG A:ASN699 3.5 17.8 1.0
CG A:GLU701 3.7 19.2 1.0
O A:HOH827 3.8 8.6 1.0
N A:ASN699 4.0 17.9 1.0
ND2 A:ASN699 4.2 16.7 1.0
CB A:GLU701 4.2 18.6 1.0
NE2 A:HIS672 4.4 18.3 1.0
CA A:PHE697 4.4 16.9 1.0
CG A:GLU604 4.4 22.5 1.0
N A:PHE698 4.4 17.1 1.0
OE2 A:GLU675 4.5 15.9 1.0
OE2 A:GLU701 4.5 21.5 1.0
CA A:PHE698 4.5 17.4 1.0
CD2 A:HIS672 4.6 18.0 1.0
OE1 A:GLU675 4.6 16.0 1.0
CB A:ASN699 4.7 18.0 1.0
CA A:ASN699 4.8 17.9 1.0
N A:ARG670 4.8 18.1 1.0
C A:PHE698 4.8 17.6 1.0
O A:ARG670 4.9 18.6 1.0
CB A:ARG670 5.0 18.9 1.0
CB A:PHE697 5.0 16.7 1.0

Calcium binding site 2 out of 2 in 3pgb

Go back to Calcium Binding Sites List in 3pgb
Calcium binding site 2 out of 2 in the Crystal Structure of Aspergillus Nidulans Amine Oxidase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Aspergillus Nidulans Amine Oxidase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca903

b:16.0
occ:1.00
OD1 A:ASP563 2.3 16.0 1.0
OD1 A:ASP707 2.3 16.5 1.0
OD1 A:ASP561 2.4 15.2 1.0
O A:LEU708 2.4 15.2 1.0
O A:PHE562 2.5 15.3 1.0
O A:HOH1004 2.5 6.1 1.0
C A:PHE562 3.4 15.0 1.0
CG A:ASP707 3.5 17.2 1.0
CG A:ASP563 3.5 15.4 1.0
C A:LEU708 3.5 15.3 1.0
N A:LEU708 3.6 16.3 1.0
CG A:ASP561 3.6 15.2 1.0
NZ A:LYS134 3.9 23.2 1.0
C A:ASP561 4.0 15.1 1.0
N A:PHE562 4.1 14.9 1.0
N A:ASP563 4.1 15.0 1.0
OD2 A:ASP707 4.2 16.2 1.0
CA A:LEU708 4.2 15.8 1.0
C A:ASP707 4.2 16.8 1.0
CA A:ASP563 4.2 15.0 1.0
O A:ASP561 4.2 15.1 1.0
OD2 A:ASP561 4.3 16.2 1.0
OD2 A:ASP563 4.3 15.7 1.0
CA A:ASP707 4.4 17.2 1.0
O A:PRO567 4.4 16.6 1.0
CA A:PHE562 4.4 14.9 1.0
CA A:ASP561 4.4 15.1 1.0
CB A:ASP563 4.5 15.0 1.0
CB A:ASP707 4.5 17.2 1.0
CD1 A:LEU708 4.6 16.2 1.0
N A:VAL709 4.6 14.8 1.0
CB A:ASP561 4.6 15.2 1.0
OD1 A:ASN569 4.7 14.0 1.0
CA A:VAL709 5.0 14.2 1.0

Reference:

A.P.Mcgrath, S.M.Mithieux, C.A.Collyer, J.G.Bakhuis, M.Van Den Berg, A.Sein, A.Heinz, C.Schmelzer, A.S.Weiss, J.M.Guss. Structure and Activity of Aspergillus Nidulans Copper Amine Oxidase Biochemistry V. 50 5718 2011.
ISSN: ISSN 0006-2960
PubMed: 21604787
DOI: 10.1021/BI200555C
Page generated: Sat Dec 12 04:24:41 2020

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