Atomistry » Calcium » PDB 3pe0-3pty » 3pp5
Atomistry »
  Calcium »
    PDB 3pe0-3pty »
      3pp5 »

Calcium in PDB 3pp5: High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1

Protein crystallography data

The structure of High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1, PDB code: 3pp5 was solved by J.Linkner, G.Witte, U.Curth, J.Faix, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 19.39 / 1.50
Space group P 63
Cell size a, b, c (Å), α, β, γ (°) 39.140, 39.140, 118.190, 90.00, 90.00, 120.00
R / Rfree (%) 15.9 / 18.2

Calcium Binding Sites:

The binding sites of Calcium atom in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1 (pdb code 3pp5). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1, PDB code: 3pp5:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3pp5

Go back to Calcium Binding Sites List in 3pp5
Calcium binding site 1 out of 2 in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca71

b:9.2
occ:0.84
OE2 A:GLU15 2.4 13.6 1.0
O A:HOH114 2.5 13.0 1.0
OE2 A:GLU18 2.5 12.6 1.0
OE1 A:GLU18 2.7 12.2 1.0
CD A:GLU18 3.0 12.0 1.0
CD A:GLU15 3.5 13.0 1.0
CA A:CA72 3.8 10.1 0.8
CG A:GLU15 4.3 12.9 1.0
O A:HOH126 4.3 16.4 1.0
OE1 A:GLU15 4.4 15.0 1.0
O A:HOH160 4.4 34.1 1.0
CG A:GLU18 4.5 11.7 1.0
NE1 A:TRP11 4.5 15.2 1.0
CD1 A:TRP11 4.6 13.5 1.0
N A:GLU15 4.8 12.9 1.0
CA A:GLU15 4.9 12.1 1.0
CB A:ARG14 4.9 15.6 1.0
O A:HOH168 4.9 37.2 1.0

Calcium binding site 2 out of 2 in 3pp5

Go back to Calcium Binding Sites List in 3pp5
Calcium binding site 2 out of 2 in the High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of High-Resolution Structure of the Trimeric Scar/Wave Complex Precursor BRK1 within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca72

b:10.1
occ:0.82
OE1 A:GLU18 2.3 12.2 1.0
OE1 A:GLU15 2.5 15.0 1.0
OE2 A:GLU15 2.7 13.6 1.0
CD A:GLU15 3.0 13.0 1.0
CD A:GLU18 3.6 12.0 1.0
CA A:CA71 3.8 9.2 0.8
CB A:GLU18 4.1 11.2 1.0
CG A:GLU18 4.4 11.7 1.0
CG A:GLU15 4.4 12.9 1.0
OE2 A:GLU18 4.4 12.6 1.0
O A:HOH133 4.5 29.0 1.0
O A:HOH130 4.5 18.8 1.0
O A:HOH132 4.7 27.8 1.0
OD1 A:ASP19 4.8 23.4 1.0
CA A:GLU15 4.9 12.1 1.0
CB A:GLU15 5.0 14.1 1.0

Reference:

J.Linkner, G.Witte, T.Stradal, U.Curth, J.Faix. High-Resolution X-Ray Structure of the Trimeric Scar/Wave-Complex Precursor BRK1. Plos One V. 6 21327 2011.
ISSN: ESSN 1932-6203
PubMed: 21701600
DOI: 10.1371/JOURNAL.PONE.0021327
Page generated: Sat Jul 13 16:54:26 2024

Last articles

Zn in 9J0N
Zn in 9J0O
Zn in 9J0P
Zn in 9FJX
Zn in 9EKB
Zn in 9C0F
Zn in 9CAH
Zn in 9CH0
Zn in 9CH3
Zn in 9CH1
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy