Calcium in PDB 3pty: Crystal Structure of the C-Terminal Extracellular Domain of Mycobacterium Tuberculosis Embc

Protein crystallography data

The structure of Crystal Structure of the C-Terminal Extracellular Domain of Mycobacterium Tuberculosis Embc, PDB code: 3pty was solved by L.J.Alderwick, G.S.Besra, K.Futterer, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 43.28 / 2.00
Space group P 65 2 2
Cell size a, b, c (Å), α, β, γ (°) 129.130, 129.130, 136.730, 90.00, 90.00, 120.00
R / Rfree (%) 18.7 / 20.7

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the C-Terminal Extracellular Domain of Mycobacterium Tuberculosis Embc (pdb code 3pty). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the C-Terminal Extracellular Domain of Mycobacterium Tuberculosis Embc, PDB code: 3pty:

Calcium binding site 1 out of 1 in 3pty

Go back to Calcium Binding Sites List in 3pty
Calcium binding site 1 out of 1 in the Crystal Structure of the C-Terminal Extracellular Domain of Mycobacterium Tuberculosis Embc


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the C-Terminal Extracellular Domain of Mycobacterium Tuberculosis Embc within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca1125

b:28.9
occ:1.00
O A:HIS956 2.4 23.7 1.0
O A:ASP951 2.5 29.5 1.0
O A:HOH33 2.5 23.3 1.0
O A:HOH39 2.6 26.2 1.0
OD2 A:ASP949 2.6 25.6 1.0
OD1 A:ASP949 2.6 28.6 1.0
O A:HOH67 2.6 24.2 1.0
CG A:ASP949 2.9 27.1 1.0
C A:HIS956 3.6 26.6 1.0
C A:ASP951 3.7 31.8 1.0
O A:ALA953 4.1 37.9 1.0
O A:ASP949 4.3 24.2 1.0
CA A:TRP957 4.3 25.7 1.0
CB A:ASP949 4.4 22.5 1.0
O A:HOH68 4.4 30.1 1.0
N A:TRP957 4.4 26.0 1.0
CA A:LEU952 4.5 31.2 1.0
CB A:HIS956 4.5 28.3 1.0
N A:LEU952 4.5 31.3 1.0
N A:ASP951 4.5 31.6 1.0
CA A:ASP951 4.6 31.8 1.0
CD2 A:HIS956 4.6 33.1 1.0
CA A:HIS956 4.6 25.1 1.0
O A:HOH41 4.6 28.2 1.0
OE1 A:GLN859 4.6 33.3 1.0
CB A:TRP957 4.7 22.1 1.0
C A:ASP949 4.7 27.9 1.0
O A:VAL860 4.8 30.2 1.0
OG A:SER853 4.8 22.5 1.0
C A:LEU952 4.8 33.9 1.0
O A:SER853 4.9 23.1 1.0
CB A:ASP951 4.9 34.5 1.0
CG A:HIS956 4.9 31.6 1.0

Reference:

L.J.Alderwick, G.S.Lloyd, H.Ghadbane, J.W.May, A.Bhatt, L.Eggeling, K.Futterer, G.S.Besra. The C-Terminal Domain of the Arabinosyltransferase Mycobacterium Tuberculosis Embc Is A Lectin-Like Carbohydrate Binding Module. Plos Pathog. V. 7 E1001 2011.
ISSN: ISSN 1553-7366
PubMed: 21383969
DOI: 10.1371/JOURNAL.PPAT.1001299
Page generated: Sat Dec 12 04:25:06 2020

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