Atomistry » Calcium » PDB 3pvh-3q4w » 3pxt
Atomistry »
  Calcium »
    PDB 3pvh-3q4w »
      3pxt »

Calcium in PDB 3pxt: Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase

Enzymatic activity of Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase

All present enzymatic activity of Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase:
1.4.99.3;

Protein crystallography data

The structure of Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase, PDB code: 3pxt was solved by E.T.Yukl, B.R.Goblirsch, C.M.Wilmot, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.49 / 2.16
Space group P 1
Cell size a, b, c (Å), α, β, γ (°) 55.530, 83.520, 107.780, 109.94, 91.54, 105.78
R / Rfree (%) 17.7 / 22.6

Other elements in 3pxt:

The structure of Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase also contains other interesting chemical elements:

Iron (Fe) 4 atoms
Sodium (Na) 3 atoms

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase (pdb code 3pxt). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 2 binding sites of Calcium where determined in the Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase, PDB code: 3pxt:
Jump to Calcium binding site number: 1; 2;

Calcium binding site 1 out of 2 in 3pxt

Go back to Calcium Binding Sites List in 3pxt
Calcium binding site 1 out of 2 in the Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca400

b:19.3
occ:1.00
O A:HOH398 2.3 12.7 1.0
O A:PRO277 2.4 24.1 1.0
OD1 A:ASN66 2.4 25.1 1.0
O A:THR275 2.4 23.0 1.0
O A:HOH406 2.5 13.3 1.0
O A:HOH430 2.5 10.5 1.0
O A:HOH408 2.6 16.2 1.0
CG A:ASN66 3.4 24.7 1.0
C A:PRO277 3.6 24.3 1.0
C A:THR275 3.6 23.2 1.0
ND2 A:ASN66 4.0 24.1 1.0
C A:GLY276 4.2 24.1 1.0
OG1 A:THR275 4.3 22.5 1.0
N A:PRO277 4.3 24.3 1.0
O A:THR67 4.3 22.6 1.0
CA A:GLY276 4.4 24.0 1.0
CB A:THR275 4.4 23.0 1.0
O A:HOH415 4.4 20.4 1.0
CA A:TYR278 4.4 24.0 1.0
N A:GLY276 4.5 23.5 1.0
N A:TYR278 4.5 24.4 1.0
O1A A:HEC600 4.5 25.2 1.0
CA A:PRO277 4.6 24.5 1.0
O A:GLY276 4.6 24.1 1.0
O A:HOH435 4.6 19.3 1.0
CA A:THR275 4.6 23.1 1.0
CB A:ASN66 4.7 24.5 1.0
CD2 A:TYR278 4.7 24.5 1.0
O2A A:HEC600 4.8 26.3 1.0
CD A:PRO277 4.8 24.3 1.0

Calcium binding site 2 out of 2 in 3pxt

Go back to Calcium Binding Sites List in 3pxt
Calcium binding site 2 out of 2 in the Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Ferrous Co Adduct of Maug in Complex with Pre- Methylamine Dehydrogenase within 5.0Å range:
probe atom residue distance (Å) B Occ
B:Ca400

b:19.5
occ:1.00
O B:HOH379 2.2 12.6 1.0
O B:PRO277 2.3 19.8 1.0
O B:THR275 2.4 22.2 1.0
O B:HOH402 2.4 8.2 1.0
O B:HOH461 2.5 14.9 1.0
O B:HOH405 2.5 22.1 1.0
OD1 B:ASN66 2.5 19.7 1.0
CG B:ASN66 3.5 21.4 1.0
C B:PRO277 3.6 20.2 1.0
C B:THR275 3.6 22.3 1.0
ND2 B:ASN66 4.1 21.0 1.0
C B:GLY276 4.2 22.0 1.0
O B:HOH394 4.3 16.5 1.0
CA B:GLY276 4.3 22.2 1.0
CA B:TYR278 4.3 19.0 1.0
N B:PRO277 4.3 21.7 1.0
O B:THR67 4.4 21.1 1.0
CB B:THR275 4.4 22.0 1.0
N B:TYR278 4.4 19.6 1.0
OG1 B:THR275 4.4 22.0 1.0
N B:GLY276 4.4 22.4 1.0
O B:GLY276 4.6 22.1 1.0
CA B:PRO277 4.6 21.0 1.0
O1A B:HEC600 4.6 22.7 1.0
CA B:THR275 4.6 22.1 1.0
O2A B:HEC600 4.7 22.3 1.0
O B:HOH493 4.7 24.8 1.0
CB B:ASN66 4.8 22.0 1.0
CD2 B:TYR278 4.8 19.9 1.0

Reference:

E.T.Yukl, B.R.Goblirsch, V.L.Davidson, C.M.Wilmot. Crystal Structures of Co and No Adducts of Maug in Complex with Pre-Methylamine Dehydrogenase: Implications For the Mechanism of Dioxygen Activation. Biochemistry V. 50 2931 2011.
ISSN: ISSN 0006-2960
PubMed: 21355604
DOI: 10.1021/BI200023N
Page generated: Sat Dec 12 04:25:22 2020

Last articles

Zn in 8WB0
Zn in 8WAX
Zn in 8WAU
Zn in 8WAZ
Zn in 8WAY
Zn in 8WAV
Zn in 8WAW
Zn in 8WAT
Zn in 8W7M
Zn in 8WD3
© Copyright 2008-2020 by atomistry.com
Home   |    Site Map   |    Copyright   |    Contact us   |    Privacy