Calcium in PDB 3q4g: Structure of Nad Synthetase From Vibrio Cholerae

All present enzymatic activity of Structure of Nad Synthetase From Vibrio Cholerae:
6.3.1.5;

The structure of Structure of Nad Synthetase From Vibrio Cholerae, PDB code: 3q4g was solved by S.M.Anderson, Z.Wawrzak, O.Onopriyenko, S.N.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	46.70 / 2.40
Space group	P 32 2 1
Cell size a, b, c (Å), α, β, γ (°)	93.426, 93.426, 165.297, 90.00, 90.00, 120.00
R / Rfree (%)	17.1 / 21.5

The binding sites of Calcium atom in the Structure of Nad Synthetase From Vibrio Cholerae (pdb code 3q4g). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Structure of Nad Synthetase From Vibrio Cholerae, PDB code: 3q4g:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Structure of Nad Synthetase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of Nad Synthetase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca277 b:60.4 occ:1.00 OG1 A:THR101 3.3 42.0 1.0 ND2 A:ASN65 3.4 35.6 1.0 OE1 A:GLN58 3.5 43.6 1.0 CG2 A:VAL61 3.8 30.2 1.0 CG A:GLU62 3.9 38.3 1.0 O A:TYR73 4.1 47.0 1.0 CG2 A:THR101 4.2 39.6 1.0 CB A:THR101 4.3 42.2 1.0 N A:GLU62 4.3 31.1 1.0 CA A:GLU62 4.3 36.6 1.0 O A:HOH402 4.5 53.1 1.0 C A:VAL61 4.6 34.3 1.0 CB A:VAL61 4.6 29.9 1.0 CD A:GLN58 4.6 45.9 1.0 CG A:ASN65 4.7 42.4 1.0 O A:HOH288 4.7 49.1 1.0 CB A:GLU62 4.7 33.7 1.0 O A:VAL61 4.8 38.5 1.0 O A:HOH470 4.8 67.4 1.0 CA A:THR101 4.9 41.3 1.0 C A:TYR73 5.0 40.8 1.0

Calcium binding site 2 out of 4 in the Structure of Nad Synthetase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of Nad Synthetase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca278 b:59.0 occ:1.00 O A:HOH338 3.1 38.3 1.0 NH2 A:ARG23 3.2 34.1 1.0 O A:HOH422 3.5 41.8 1.0 O B:HOH420 3.7 46.2 1.0 CD1 B:TYR275 3.9 25.1 1.0 CE1 B:TYR275 4.0 22.1 1.0 CZ A:ARG23 4.4 28.8 1.0 NH1 A:ARG23 4.8 18.4 1.0

Calcium binding site 3 out of 4 in the Structure of Nad Synthetase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of Nad Synthetase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca279 b:63.2 occ:1.00 OG A:SER50 3.0 33.5 1.0 O A:HOH326 3.0 33.8 1.0 N A:SER50 3.1 22.5 1.0 OG A:SER45 3.3 49.8 1.0 O A:HOH323 3.3 55.8 1.0 CB A:SER50 3.5 27.3 1.0 CB A:ASP49 3.6 27.0 1.0 CA A:GLY47 3.6 29.0 1.0 C A:GLY47 3.7 33.0 1.0 O A:GLY47 3.8 31.9 1.0 N A:ASP49 3.9 25.3 1.0 CA A:SER50 3.9 29.7 1.0 C A:ASP49 4.0 30.5 1.0 CA A:ASP49 4.0 25.1 1.0 N A:GLY47 4.1 37.1 1.0 O A:HOH414 4.2 55.4 1.0 N A:VAL48 4.4 34.4 1.0 O A:HOH405 4.4 44.5 1.0 CG A:ASP49 4.5 34.6 1.0 OG1 A:THR166 4.6 42.7 1.0 CB A:SER45 4.6 38.9 1.0 OD2 A:ASP49 4.6 33.4 1.0 O A:HOH293 4.8 32.8 1.0 C A:VAL48 4.8 30.2 1.0 CB A:THR166 5.0 38.0 1.0 C A:SER50 5.0 28.4 1.0 N A:THR51 5.0 27.4 1.0

Calcium binding site 4 out of 4 in the Structure of Nad Synthetase From Vibrio Cholerae


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of Nad Synthetase From Vibrio Cholerae within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca277 b:58.0 occ:1.00 O B:HOH372 3.1 57.3 1.0 ND2 B:ASN65 3.3 38.3 1.0 O B:HOH315 3.4 46.1 1.0 OG1 B:THR101 3.5 34.5 1.0 OE1 B:GLN58 3.6 37.1 1.0 CG B:GLU62 3.7 28.7 1.0 CG2 B:VAL61 4.0 25.2 1.0 O B:HOH447 4.0 46.5 1.0 O B:TYR73 4.2 44.9 1.0 CA B:GLU62 4.3 27.7 1.0 N B:GLU62 4.3 26.3 1.0 O B:HOH385 4.3 36.0 1.0 CG2 B:THR101 4.4 30.3 1.0 C B:VAL61 4.5 31.9 1.0 CB B:THR101 4.5 31.2 1.0 CB B:GLU62 4.6 26.6 1.0 O B:VAL61 4.6 34.7 1.0 CG B:ASN65 4.6 32.7 1.0 CD B:GLN58 4.7 31.3 1.0 CB B:VAL61 4.7 31.6 1.0 OE2 B:GLU62 4.8 40.1 1.0 CD B:GLU62 4.8 35.4 1.0 O B:HOH346 5.0 37.5 1.0

S.M.Anderson, Z.Wawrzak, O.Onopriyenko, S.N.Peterson, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases(Csgid). Structure of Nad Synthetase From Vibrio Cholerae To Be Published.