Calcium in PDB 3q7h: Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii

All present enzymatic activity of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii:
3.4.21.92;

The structure of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii, PDB code: 3q7h was solved by S.M.Anderson, Z.Wawrzak, E.Gordon, J.Hasseman, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectious Diseases (Csgid), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	37.49 / 2.50
Space group	P 1 21 1
Cell size a, b, c (Å), α, β, γ (°)	101.912, 137.469, 127.784, 90.00, 109.03, 90.00
R / Rfree (%)	17 / 20.8

Pages:

>>> Page 1 <<< Page 2, Binding sites: 11 - 20; Page 3, Binding sites: 21 - 28;

Binding sites:

The binding sites of Calcium atom in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii (pdb code 3q7h). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 28 binding sites of Calcium where determined in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii, PDB code: 3q7h:
Jump to Calcium binding site number: 1; 2; 3; 4; 5; 6; 7; 8; 9; 10;

Calcium binding site 1 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca199 b:37.1 occ:1.00 O A:MSE82 2.7 33.0 1.0 O A:PRO87 2.8 37.4 1.0 O A:VAL85 2.8 35.2 1.0 O A:HOH664 2.9 43.8 1.0 O A:HOH409 3.0 33.3 1.0 O A:HOH674 3.1 44.7 1.0 C A:PRO87 3.7 35.3 1.0 O A:LYS86 3.8 36.2 1.0 O A:HOH986 3.9 54.7 1.0 C A:VAL85 3.9 36.4 1.0 C A:MSE82 3.9 35.1 1.0 O A:GLN83 4.2 42.7 1.0 C A:LYS86 4.2 32.8 1.0 CG2 A:VAL89 4.3 28.3 1.0 CG2 A:VAL85 4.3 28.6 1.0 CA A:ASP88 4.3 37.0 1.0 N A:ASP88 4.3 34.1 1.0 CA A:GLN83 4.3 33.5 1.0 C A:GLN83 4.4 35.9 1.0 N A:VAL89 4.4 32.7 1.0 N A:PRO87 4.6 34.0 1.0 N A:GLN83 4.6 31.8 1.0 O A:HOH1022 4.6 42.1 1.0 C A:ASP88 4.7 40.0 1.0 CA A:PRO87 4.8 32.9 1.0 N A:VAL85 4.8 28.6 1.0 CA A:VAL85 4.8 32.3 1.0 N A:LYS86 4.8 34.6 1.0 CA A:LYS86 4.8 35.9 1.0

Calcium binding site 2 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca199 b:32.4 occ:1.00 O B:MSE82 2.7 32.5 1.0 O B:PRO87 2.7 31.0 1.0 O B:VAL85 2.8 36.7 1.0 O B:HOH1142 3.1 33.7 1.0 O B:HOH611 3.1 36.6 1.0 O B:HOH973 3.2 40.3 1.0 C B:PRO87 3.8 30.9 1.0 C B:MSE82 3.8 31.4 1.0 O B:LYS86 3.9 38.3 1.0 C B:VAL85 4.0 34.9 1.0 O B:GLN83 4.1 38.7 1.0 CG2 B:VAL85 4.2 26.9 1.0 CA B:GLN83 4.2 31.3 1.0 C B:LYS86 4.2 35.9 1.0 C B:GLN83 4.2 35.0 1.0 CG2 B:VAL89 4.3 24.7 1.0 CA B:ASP88 4.3 30.6 1.0 NH1 D:ARG194 4.3 60.0 1.0 N B:ASP88 4.4 29.8 1.0 N B:VAL89 4.4 31.3 1.0 N B:GLN83 4.5 28.4 1.0 N B:PRO87 4.6 31.4 1.0 C B:ASP88 4.6 36.5 1.0 N B:VAL85 4.7 30.3 1.0 CA B:PRO87 4.8 31.4 1.0 CA B:VAL85 4.8 32.3 1.0 CA B:LYS86 4.9 40.3 1.0 N B:LYS86 4.9 32.3 1.0 CA B:MSE82 5.0 36.9 1.0 OE1 B:GLN83 5.0 33.3 1.0

Calcium binding site 3 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca200 b:48.0 occ:1.00 N B:VAL72 3.2 32.0 1.0 N B:LEU127 3.2 32.6 1.0 O B:HOH279 3.3 37.7 1.0 CB B:VAL72 3.7 38.3 1.0 CA B:VAL126 3.8 27.4 1.0 CG2 B:VAL72 3.9 40.1 1.0 CA B:ALA71 3.9 32.1 1.0 O B:LEU127 4.0 41.7 1.0 CA B:VAL72 4.0 33.2 1.0 C B:VAL126 4.0 30.9 1.0 C B:ALA71 4.0 36.6 1.0 CB B:VAL126 4.1 28.8 1.0 CB B:LEU127 4.1 37.6 1.0 CA B:LEU127 4.2 36.4 1.0 CG B:LEU127 4.3 40.6 1.0 CB B:ALA71 4.5 28.2 1.0 O B:GLY70 4.5 36.6 1.0 C B:LEU127 4.5 37.8 1.0 CG1 B:VAL126 4.7 32.5 1.0 CD1 B:LEU127 4.7 50.0 1.0 CE1 B:HIS124 4.8 43.3 1.0 N B:THR73 4.9 31.0 1.0 O B:GLN125 5.0 27.7 1.0

Calcium binding site 4 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca199 b:35.3 occ:1.00 O C:PRO87 2.6 33.1 1.0 O C:MSE82 2.7 34.2 1.0 O C:VAL85 2.8 35.8 1.0 O C:HOH585 2.9 42.4 1.0 O C:HOH1350 3.0 45.1 1.0 O C:HOH1151 3.4 54.2 1.0 C C:PRO87 3.7 32.8 1.0 C C:MSE82 3.9 33.8 1.0 O C:HOH1150 3.9 42.4 1.0 C C:VAL85 3.9 36.6 1.0 CG2 C:VAL89 4.2 26.8 1.0 CG2 C:VAL85 4.2 30.3 1.0 O C:LYS86 4.3 41.8 1.0 C C:LYS86 4.3 35.3 1.0 CA C:GLN83 4.3 31.7 1.0 O C:GLN83 4.4 39.2 1.0 CA C:ASP88 4.4 30.1 1.0 C C:GLN83 4.4 35.7 1.0 N C:ASP88 4.4 32.6 1.0 N C:VAL89 4.5 32.0 1.0 N C:PRO87 4.5 31.7 1.0 N C:GLN83 4.6 34.8 1.0 CA C:PRO87 4.7 30.5 1.0 N C:VAL85 4.7 30.7 1.0 CA C:VAL85 4.8 35.2 1.0 C C:ASP88 4.8 34.5 1.0 N C:LYS86 4.8 36.4 1.0 CA C:LYS86 4.8 39.2 1.0 CA C:MSE82 4.9 34.2 1.0

Calcium binding site 5 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 5 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ C:Ca200 b:55.7 occ:1.00 N C:VAL72 3.2 29.7 1.0 N C:LEU127 3.3 32.6 1.0 O C:HOH924 3.6 47.9 1.0 CA C:ALA71 3.7 33.0 1.0 O C:LEU127 3.8 42.3 1.0 CB C:VAL72 3.9 39.7 1.0 CG2 C:VAL72 3.9 39.8 1.0 C C:ALA71 3.9 35.1 1.0 CA C:VAL126 4.0 28.3 1.0 CB C:LEU127 4.0 35.3 1.0 CA C:VAL72 4.1 34.9 1.0 CA C:LEU127 4.1 34.2 1.0 C C:VAL126 4.2 30.8 1.0 CB C:ALA71 4.3 26.8 1.0 O C:HOH921 4.3 55.8 1.0 CG C:LEU127 4.3 40.4 1.0 CB C:VAL126 4.4 29.1 1.0 C C:LEU127 4.4 35.6 1.0 O C:GLY70 4.4 36.2 1.0 CD1 C:LEU127 4.7 50.9 1.0 N C:ALA71 4.9 36.4 1.0 N C:THR73 4.9 30.8 1.0

Calcium binding site 6 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 6 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca197 b:32.4 occ:1.00 O D:PRO87 2.6 30.4 1.0 O D:VAL85 2.7 33.5 1.0 O D:MSE82 2.7 34.0 1.0 O D:HOH486 3.0 27.5 1.0 O D:HOH560 3.0 33.5 1.0 C D:PRO87 3.7 32.3 1.0 C D:VAL85 3.9 35.8 1.0 C D:MSE82 3.9 34.2 1.0 O D:LYS86 4.0 39.2 1.0 C D:LYS86 4.2 37.0 1.0 CG2 D:VAL85 4.2 30.2 1.0 O D:GLN83 4.3 40.0 1.0 CG2 D:VAL89 4.3 23.9 1.0 N D:ASP88 4.3 30.3 1.0 CA D:ASP88 4.4 31.4 1.0 CA D:GLN83 4.4 31.1 1.0 C D:GLN83 4.4 36.9 1.0 N D:VAL89 4.5 30.6 1.0 N D:PRO87 4.5 32.1 1.0 N D:GLN83 4.6 31.1 1.0 CA D:PRO87 4.7 30.1 1.0 N D:VAL85 4.7 30.6 1.0 C D:ASP88 4.7 34.9 1.0 N D:LYS86 4.7 36.1 1.0 CA D:LYS86 4.8 40.2 1.0 CA D:VAL85 4.8 33.2 1.0

Calcium binding site 7 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 7 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ D:Ca198 b:49.6 occ:1.00 N D:VAL72 3.2 29.0 1.0 O D:HOH294 3.3 36.9 1.0 N D:LEU127 3.4 30.8 1.0 O D:HOH1184 3.5 45.4 1.0 CB D:VAL72 3.7 36.5 1.0 CA D:VAL126 3.9 26.8 1.0 CG2 D:VAL72 3.9 37.5 1.0 CA D:ALA71 3.9 29.0 1.0 CA D:VAL72 4.0 33.4 1.0 O D:LEU127 4.0 45.0 1.0 C D:ALA71 4.1 35.8 1.0 C D:VAL126 4.1 29.3 1.0 CB D:LEU127 4.2 35.2 1.0 CB D:VAL126 4.2 29.0 1.0 CA D:LEU127 4.3 36.2 1.0 CG D:LEU127 4.3 39.9 1.0 O D:GLY70 4.4 39.4 1.0 CB D:ALA71 4.5 28.6 1.0 O D:HOH905 4.6 45.8 1.0 CE1 D:HIS124 4.6 41.9 1.0 C D:LEU127 4.6 37.5 1.0 CG1 D:VAL126 4.7 31.3 1.0 CD1 D:LEU127 4.7 50.1 1.0 O D:GLN125 4.8 30.2 1.0 CG1 D:VAL72 5.0 34.3 1.0

Calcium binding site 8 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 8 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca197 b:41.8 occ:1.00 O E:PRO87 2.7 35.1 1.0 O E:MSE82 2.7 33.3 1.0 O E:VAL85 2.7 34.5 1.0 O E:HOH200 2.9 36.6 1.0 O E:HOH597 2.9 40.4 1.0 C E:PRO87 3.7 35.5 1.0 C E:MSE82 3.9 34.3 1.0 C E:VAL85 3.9 36.7 1.0 O E:LYS86 4.1 37.7 1.0 CG2 E:VAL85 4.2 28.9 1.0 CG2 E:VAL89 4.3 29.2 1.0 C E:LYS86 4.3 36.6 1.0 N E:ASP88 4.3 34.6 1.0 CA E:GLN83 4.3 33.5 1.0 CA E:ASP88 4.3 37.8 1.0 C E:GLN83 4.4 34.7 1.0 O E:GLN83 4.4 44.3 1.0 O E:HOH335 4.5 40.3 1.0 N E:VAL89 4.5 35.4 1.0 N E:PRO87 4.5 35.8 1.0 N E:GLN83 4.6 33.9 1.0 N E:VAL85 4.7 31.1 1.0 CA E:PRO87 4.7 34.7 1.0 CA E:VAL85 4.8 33.5 1.0 C E:ASP88 4.8 41.1 1.0 N E:LYS86 4.9 36.9 1.0 CA E:LYS86 4.9 38.7 1.0 CA E:MSE82 5.0 37.5 1.0

Calcium binding site 9 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 9 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca198 b:74.4 occ:1.00 O E:GLU183 2.8 47.5 1.0 C E:GLU183 3.8 39.6 1.0 OE1 E:GLU183 4.4 80.7 1.0 CA E:GLU183 4.4 36.3 1.0 NZ E:LYS161 4.4 49.7 1.0 O E:VAL182 4.5 35.8 1.0 C E:TYR184 4.7 33.4 1.0 N E:GLY185 4.8 32.3 1.0 N E:TYR184 4.8 39.8 1.0 O E:TYR184 4.9 35.9 1.0 CD E:GLU183 4.9 78.0 1.0

Calcium binding site 10 out of 28 in the Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 10 of Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii within 5.0Å range: probe atom residue distance (Å) B Occ E:Ca199 b:55.0 occ:1.00 N E:VAL72 3.2 32.5 1.0 N E:LEU127 3.3 32.6 1.0 CB E:VAL72 3.7 34.7 1.0 CG2 E:VAL72 3.8 40.9 1.0 CA E:VAL126 3.8 31.3 1.0 CA E:ALA71 3.9 31.9 1.0 CA E:VAL72 4.0 34.6 1.0 C E:ALA71 4.0 33.9 1.0 O E:LEU127 4.0 43.8 1.0 C E:VAL126 4.1 28.7 1.0 CB E:LEU127 4.1 36.4 1.0 CA E:LEU127 4.2 34.7 1.0 CB E:VAL126 4.3 32.1 1.0 CG E:LEU127 4.3 43.6 1.0 O E:GLY70 4.3 33.0 1.0 CB E:ALA71 4.5 30.9 1.0 C E:LEU127 4.5 37.9 1.0 CG1 E:VAL126 4.6 37.3 1.0 CD1 E:LEU127 4.8 55.8 1.0 O E:GLN125 4.8 31.3 1.0 CE1 E:HIS124 4.8 40.9 1.0 N E:THR73 5.0 32.1 1.0 N E:ALA71 5.0 32.6 1.0

S.M.Anderson, Z.Wawrzak, E.Gordon, J.Hasseman, W.F.Anderson, A.Savchenko, Center For Structural Genomics Of Infectiousdiseases (Csgid). Structure of the Clpp Subunit of the Atp-Dependent Clp Protease From Coxiella Burnetii To Be Published.