Calcium in PDB 3q84: Crystal Structure of Human Pacsin 1 F-Bar Domain

The structure of Crystal Structure of Human Pacsin 1 F-Bar Domain, PDB code: 3q84 was solved by X.Bai, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	29.06 / 2.80
Space group	C 1 2 1
Cell size a, b, c (Å), α, β, γ (°)	86.346, 154.290, 215.446, 90.00, 90.34, 90.00
R / Rfree (%)	22.1 / 29.4

The binding sites of Calcium atom in the Crystal Structure of Human Pacsin 1 F-Bar Domain (pdb code 3q84). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of Human Pacsin 1 F-Bar Domain, PDB code: 3q84:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of Human Pacsin 1 F-Bar Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of Human Pacsin 1 F-Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ B:Ca400 b:87.8 occ:1.00 O B:ILE71 2.7 45.2 1.0 O B:GLN76 2.8 47.4 1.0 O B:GLU72 3.0 48.7 1.0 OE1 B:GLU81 3.2 45.6 1.0 O B:GLY74 3.2 48.5 1.0 CD B:GLU81 3.5 43.7 1.0 C B:GLU72 3.6 48.2 1.0 O B:HOH334 3.6 26.7 1.0 CA B:GLU72 3.7 48.5 1.0 C B:ILE71 3.8 44.6 1.0 OE2 B:GLU81 3.8 47.8 1.0 CE1 B:TYR77 3.9 50.3 1.0 C B:GLN76 3.9 46.6 1.0 CD1 B:TYR77 4.1 49.5 1.0 C B:GLY74 4.1 48.1 1.0 CG B:GLU81 4.2 40.7 1.0 N B:GLU72 4.2 46.6 1.0 N B:GLY74 4.2 48.9 1.0 N B:GLN76 4.3 46.7 1.0 CZ B:TYR77 4.5 52.0 1.0 N B:LYS73 4.6 48.8 1.0 CA B:GLN76 4.6 46.6 1.0 CA B:GLY74 4.7 48.3 1.0 CG2 B:ILE71 4.8 39.2 1.0 C B:LYS73 4.8 49.6 1.0 CG B:TYR77 4.9 48.1 1.0 OE1 B:GLU72 4.9 61.1 1.0 OH B:TYR77 4.9 54.9 1.0 CB B:GLU81 4.9 38.3 1.0 N B:TYR77 4.9 46.3 1.0 CD B:GLU72 5.0 60.4 1.0 CA B:ILE71 5.0 42.6 1.0 CB B:GLN76 5.0 46.4 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of Human Pacsin 1 F-Bar Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of Human Pacsin 1 F-Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ G:Ca400 b:91.5 occ:1.00 O G:GLN76 2.7 41.8 1.0 OE1 G:GLU81 2.9 45.4 1.0 O G:ILE71 3.0 41.4 1.0 O G:GLU72 3.1 44.7 1.0 CD G:GLU81 3.2 43.9 1.0 O G:GLY74 3.3 41.4 1.0 CA G:GLU72 3.6 44.6 1.0 C G:GLU72 3.7 44.2 1.0 OE2 G:GLU81 3.7 46.1 1.0 CG G:GLU81 3.8 38.9 1.0 CE1 G:TYR77 3.8 45.9 1.0 C G:GLN76 3.9 42.0 1.0 C G:ILE71 3.9 41.1 1.0 CD1 G:TYR77 4.0 45.7 1.0 N G:GLU72 4.2 42.5 1.0 C G:GLY74 4.3 42.2 1.0 N G:GLN76 4.4 42.0 1.0 CZ G:TYR77 4.6 49.4 1.0 CA G:GLN76 4.7 41.8 1.0 N G:GLY74 4.7 43.6 1.0 N G:LYS73 4.8 44.6 1.0 CG G:TYR77 4.8 44.0 1.0 CB G:GLU72 4.9 45.2 1.0 N G:TYR77 4.9 42.2 1.0 CG2 G:ILE71 4.9 37.3 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of Human Pacsin 1 F-Bar Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of Human Pacsin 1 F-Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ M:Ca400 b:85.3 occ:1.00 CB M:TYR77 3.2 58.0 1.0 O M:GLN76 3.7 56.9 1.0 CA M:TYR77 3.8 57.5 1.0 O M:PRO75 4.0 56.9 1.0 C M:GLN76 4.3 56.7 1.0 N M:TYR77 4.4 56.9 1.0 CG M:TYR77 4.5 60.6 1.0 C M:PRO75 4.6 56.2 1.0 O M:HOH312 4.6 48.1 1.0 O M:GLY74 4.7 56.2 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of Human Pacsin 1 F-Bar Domain


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of Human Pacsin 1 F-Bar Domain within 5.0Å range: probe atom residue distance (Å) B Occ N:Ca400 b:92.4 occ:1.00 O N:GLN76 3.4 55.9 1.0 CB N:TYR77 3.4 58.0 1.0 CA N:TYR77 3.8 57.6 1.0 O N:PRO75 3.9 54.1 1.0 C N:GLN76 4.1 55.7 1.0 N N:TYR77 4.4 56.6 1.0 O N:GLY74 4.5 53.2 1.0 C N:PRO75 4.6 53.7 1.0 O N:HOH309 4.7 45.1 1.0 CG N:TYR77 4.8 60.3 1.0 OE2 N:GLU81 4.8 57.2 1.0

X.Bai, X.Bai. N/A N/A.