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Calcium in PDB 3qf1: Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution

Enzymatic activity of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution

All present enzymatic activity of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution:
1.11.1.7;

Protein crystallography data

The structure of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution, PDB code: 3qf1 was solved by N.Pandey, R.P.Singh, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh, with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å) 44.15 / 2.60
Space group P 1 21 1
Cell size a, b, c (Å), α, β, γ (°) 54.150, 80.180, 76.730, 90.00, 102.37, 90.00
R / Rfree (%) 23.5 / 25.6

Other elements in 3qf1:

The structure of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution also contains other interesting chemical elements:

Iodine (I) 10 atoms
Iron (Fe) 1 atom

Calcium Binding Sites:

The binding sites of Calcium atom in the Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution (pdb code 3qf1). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total only one binding site of Calcium was determined in the Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution, PDB code: 3qf1:

Calcium binding site 1 out of 1 in 3qf1

Go back to Calcium Binding Sites List in 3qf1
Calcium binding site 1 out of 1 in the Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution within 5.0Å range:
probe atom residue distance (Å) B Occ
A:Ca607

b:36.1
occ:1.00
 O A:PHE186 2.3 30.2 1.0
OD1 A:ASP110 2.3 37.2 1.0
OD1 A:ASP188 2.3 31.2 1.0
OG A:SER190 2.4 30.6 1.0
O A:ASP110 2.4 33.5 1.0
OG1 A:THR184 2.5 28.0 1.0
O A:THR184 2.6 26.1 1.0
CG A:ASP188 3.2 29.7 1.0
C A:ASP110 3.4 32.1 1.0
C A:THR184 3.5 27.9 1.0
C A:PHE186 3.5 31.6 1.0
CG A:ASP110 3.5 35.6 1.0
CB A:SER190 3.6 28.7 1.0
OD2 A:ASP188 3.7 33.4 1.0
CB A:THR184 3.7 28.9 1.0
CA A:THR184 4.0 28.5 1.0
N A:ASP188 4.0 31.8 1.0
N A:PHE186 4.1 29.7 1.0
N A:THR184 4.2 29.9 1.0
CA A:ASP110 4.2 30.9 1.0
N A:LEU111 4.3 32.8 1.0
CB A:ASP110 4.3 31.4 1.0
N A:SER190 4.3 29.1 1.0
C A:SER185 4.4 30.4 1.0
CA A:PHE186 4.4 28.8 1.0
CB A:ASP188 4.4 31.9 1.0
N A:LEU187 4.4 31.5 1.0
OD2 A:ASP110 4.4 35.3 1.0
CA A:LEU111 4.4 32.4 1.0
N A:SER185 4.5 29.0 1.0
CA A:LEU187 4.5 32.0 1.0
CA A:SER190 4.6 29.3 1.0
CD2 A:LEU111 4.7 21.2 1.0
CA A:ASP188 4.7 32.1 1.0
CG2 A:THR184 4.7 29.5 1.0
O A:SER185 4.8 32.5 1.0
CA A:SER185 4.8 28.4 1.0
C A:LEU187 4.8 31.7 1.0
C A:ASP188 4.9 32.2 1.0
CG2 A:VAL183 5.0 26.4 1.0

Reference:

N.Pandey, R.P.Singh, A.K.Singh, M.Sinha, P.Kaur, S.Sharma, T.P.Singh. Crystal Structure of the Complex of Caprine Lactoperoxidase with Diethylenediamine at 2.6A Resolution To Be Published.
Page generated: Sat Dec 12 04:26:41 2020

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