Calcium in PDB 3qqz: Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073

The structure of Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073, PDB code: 3qqz was solved by A.Stein, G.Chhor, B.Nocek, R.J.Fenske, S.Clancy, A.Joachimiak, Midwestcenter For Structural Genomics (Mcsg), with X-Ray Crystallography technique. A brief refinement statistics is given in the table below:

Resolution Low / High (Å)	40.00 / 2.55
Space group	P 41 3 2
Cell size a, b, c (Å), α, β, γ (°)	130.024, 130.024, 130.024, 90.00, 90.00, 90.00
R / Rfree (%)	22.9 / 29.1

The binding sites of Calcium atom in the Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073 (pdb code 3qqz). This binding sites where shown within 5.0 Angstroms radius around Calcium atom.
In total 4 binding sites of Calcium where determined in the Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073, PDB code: 3qqz:
Jump to Calcium binding site number: 1; 2; 3; 4;

Calcium binding site 1 out of 4 in the Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 1 of Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca324 b:49.2 occ:1.00 O A:HOH16 2.2 28.2 1.0 OE1 A:GLU247 2.3 55.1 1.0 O A:VAL297 2.4 43.2 1.0 O A:LEU100 2.4 44.6 1.0 O A:ALA246 2.6 38.0 1.0 O A:HOH11 3.1 14.9 1.0 CD A:GLU247 3.5 49.6 1.0 C A:LEU100 3.6 44.2 1.0 C A:VAL297 3.6 44.1 1.0 C A:ALA246 3.7 38.5 1.0 OE2 A:GLU247 4.2 47.5 1.0 CA A:ALA298 4.3 47.5 1.0 CA A:GLU247 4.3 41.5 1.0 N A:ALA298 4.3 46.2 1.0 OE2 A:GLU144 4.4 34.7 1.0 O A:LEU194 4.4 36.9 1.0 OE1 A:GLU144 4.4 39.0 1.0 N A:LEU100 4.4 43.1 1.0 N A:GLU247 4.4 40.4 1.0 CB A:GLU247 4.4 42.3 1.0 N A:THR101 4.5 45.0 1.0 CA A:LEU100 4.5 43.5 1.0 CA A:THR101 4.5 45.1 1.0 CB A:ALA298 4.6 46.9 1.0 CG A:GLU247 4.6 44.9 1.0 N A:VAL297 4.6 42.2 1.0 CA A:VAL297 4.7 42.7 1.0 CB A:LEU100 4.8 43.5 1.0 N A:ALA246 4.8 37.1 1.0 CD A:GLU144 4.8 35.1 1.0 CA A:ALA246 4.9 37.2 1.0 CB A:THR101 4.9 45.1 1.0 CB A:VAL297 4.9 43.1 1.0 O A:HOH8 4.9 28.4 1.0

Calcium binding site 2 out of 4 in the Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 2 of Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca325 b:47.1 occ:1.00 O A:HOH17 2.3 33.7 1.0 O A:HOH18 2.4 33.4 1.0 O A:HOH15 2.5 33.4 1.0 OE1 A:GLU141 2.5 37.4 1.0 O A:HOH24 2.6 36.2 1.0 OE2 A:GLU141 3.0 40.2 1.0 CD A:GLU141 3.1 38.9 1.0 OE2 A:GLU310 4.0 62.0 1.0 O A:HOH14 4.2 29.1 1.0 CB A:SER98 4.4 44.4 1.0 CG A:GLU141 4.5 38.6 1.0 CB A:ASN114 4.6 47.0 1.0 OE2 A:GLU295 4.7 34.7 1.0 OG A:SER98 4.7 42.0 1.0 O A:ASN96 4.7 56.9 1.0 CA A:CA326 4.8 36.0 1.0 O A:HOH10 4.8 36.2 1.0 O A:ILE97 4.8 47.9 1.0 OD1 A:ASN114 4.8 44.3 1.0 CG A:ASN114 4.8 45.7 1.0

Calcium binding site 3 out of 4 in the Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 3 of Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca326 b:36.0 occ:1.00 OE2 A:GLU141 2.2 40.2 1.0 O A:HOH14 2.3 29.1 1.0 O A:HOH13 2.4 29.1 1.0 O A:GLY190 2.4 34.0 1.0 OE1 A:GLU192 2.4 33.2 1.0 OE2 A:GLU192 2.6 35.5 1.0 CD A:GLU192 2.8 36.4 1.0 CD A:GLU141 3.3 38.9 1.0 C A:GLY190 3.6 35.5 1.0 CG A:GLU141 3.6 38.6 1.0 O A:HOH15 4.2 33.4 1.0 CA A:PHE191 4.3 34.6 1.0 CG A:GLU192 4.4 37.0 1.0 N A:PHE191 4.4 34.7 1.0 OE1 A:GLU141 4.4 37.4 1.0 N A:GLY190 4.5 37.7 1.0 C A:CYS189 4.5 38.8 1.0 C A:PHE191 4.5 34.7 1.0 CB A:GLU141 4.5 38.6 1.0 O A:CYS189 4.6 39.6 1.0 O A:HOH19 4.6 28.1 1.0 CA A:GLY190 4.6 36.2 1.0 OD2 A:ASP139 4.8 36.9 1.0 CA A:CA325 4.8 47.1 1.0 N A:GLU192 4.9 33.9 1.0 O A:PHE191 4.9 34.8 1.0 CA A:CYS189 4.9 39.7 1.0 O A:HOH18 4.9 33.4 1.0 CG A:GLU156 4.9 42.9 1.0

Calcium binding site 4 out of 4 in the Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073


Mono view


Stereo pair view

A full contact list of Calcium with other atoms in the Ca binding site number 4 of Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073 within 5.0Å range: probe atom residue distance (Å) B Occ A:Ca327 b:64.8 occ:1.00 O A:SER244 2.5 33.7 1.0 OG A:SER98 2.6 42.0 1.0 OE2 A:GLU295 2.6 34.7 1.0 O A:GLU295 2.7 37.6 1.0 C A:SER244 3.5 33.3 1.0 C A:GLU295 3.6 38.4 1.0 CD A:GLU295 3.6 35.7 1.0 CB A:SER98 3.7 44.4 1.0 N A:SER99 3.7 43.3 1.0 CA A:GLU295 3.9 38.6 1.0 CA A:SER244 4.0 32.8 1.0 CB A:GLU295 4.0 38.2 1.0 CA A:SER98 4.1 44.9 1.0 O A:GLU192 4.1 35.9 1.0 CB A:SER244 4.2 32.1 1.0 C A:SER98 4.3 43.7 1.0 O A:GLU141 4.3 37.0 1.0 CG A:GLU295 4.4 37.1 1.0 OE2 A:GLU192 4.4 35.5 1.0 OE1 A:GLU295 4.5 34.8 1.0 CA A:SER99 4.5 43.4 1.0 N A:GLY245 4.6 35.0 1.0 N A:GLY296 4.7 39.0 1.0 CB A:SER99 4.9 42.7 1.0 CA A:GLY245 5.0 35.0 1.0 O A:HOH24 5.0 36.2 1.0

A.Stein, G.Chhor, B.Nocek, R.J.Fenske, S.Clancy, A.Joachimiak. Crystal Structure of the C-Terminal Domain of the Yjik Protein From Escherichia Coli CFT073 To Be Published.